Results 101 to 110 of about 916,205 (180)

Benchmarking of Reference‐Based Tools for Strain‐Level Resolution of Plant Microbiome

Molecular Ecology Resources, Volume 26, Issue 7, October 2026.
ABSTRACT Strain‐level identification of each microbe is crucial for understanding its role in the host. Most of the existing tools have primarily been evaluated on human metagenomic datasets, whereas the plant microbiome exhibits greater diversity and complexity and thus poses a challenge in the strain‐level resolution of individual microbes.
Rishav Sahil, Mukesh Jain
wiley   +1 more source

Differentiation and Interconnection of the Bacterial Community Associated with Silene nigrescens Along the Soil-To-Plant Continuum in the Sub-Nival Belt of the Qiangyong Glacier

Plants
Plant microbiomes provide significant fitness advantages to their plant hosts, especially in the sub-nival belt. Studies to date have primarily focused on belowground communities in this region.
Wangchen Sonam, Yongqin Liu, Luming Ren
doaj   +1 more source

Rhizosphere Fungal Community Responses to Nitrogen Addition Reflect Genotypic Versus Trait Variation in the Marsh Sedge Schoenoplectus americanus Over Time

Molecular Ecology, Volume 35, Issue 20, October 2026.
ABSTRACT There is growing recognition that shifting environmental conditions can alter the nature and potential benefits of plant‐microbe interactions. While it is well established that interactions with fungi can benefit plants under environmental stress, little is known about how plant exposure responses correspond to different factors that might ...
Yue Liu, Michael J. Blum, Candice Y. Lumibao   +2 more
wiley   +1 more source

Soil Characteristics Overwhelm Cultivar Effects on the Structure and Assembly of Root-Associated Microbiomes of Modern Maize [PDF]

, 2018
Modern breeding primarily targets crop yield traits and is likely to influence root-associated microbiomes, which play significant roles in plant growth and health.
Redmile-Gordon, M. A., Lin CHEN, Marc REDMILE-GORDON, Nie, G., Wang, Q., Xiuli XIN, Qingyun WANG, Chen, L., Guangsen NIE, Zhang, J., Jiabao ZHANG, Redmile-Gordon, Marc   +11 more
core   +1 more source

Data_Sheet_1_Genetic Elucidation of Quorum Sensing and Cobamide Biosynthesis in Divergent Bacterial-Fungal Associations Across the Soil-Mangrove Root Interface.pdf

, 2021
Plant roots in soil host a repertoire of bacteria and fungi, whose ecological interactions could improve their functions and plant performance. However, the potential microbial interactions and underlying mechanisms remain largely unknown across the soil-
Wei Zhuang (146641), Qiuping Zhong (9380597), Ruiwen Hu (11480935), Yanmei Ni (11522668), Zhengyuan Zhou (561059), Weiming Huang (3997076), Zhiwen Luo (839410), Qingyun Yan (188165), Cheng Wang (102692), Zhili He (11752)   +9 more
core   +1 more source

Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions

Microbiome, 2020
Background When maize (Zea mays L.) is grown in the Northern hemisphere, its development is heavily arrested by chilling temperatures, especially at the juvenile phase. As some endophytes are beneficial for plants under stress conditions, we analyzed the
Stien Beirinckx, Tom Viaene, Annelies Haegeman, Jane Debode, Fien Amery, Steven Vandenabeele, Hilde Nelissen, Dirk Inzé, Raul Tito, Jeroen Raes, Caroline De Tender, Sofie Goormachtig   +11 more
doaj   +1 more source

Structural and Functional Responses of Root Endophytic Fungi to Fairy Ring Expansion in Alpine Meadows on the Tibetan Plateau

Ecology and Evolution, Volume 16, Issue 9, September 2026.
This study characterizes root endophytic fungal communities across three fairy ring types on the Tibetan Plateau, revealing that community assembly is driven by intra‐kingdom competition that leads to “Symbiotic Decoupling” and the suppression of native mutualists in fungal‐active zones.
Chengxing Wu, Zhihua Wu, Shiting Cao, Sisong Tu, Yuying Zhang, Na Li, Ming Wang, Huiyuan Ren, Qingbo Gao, Shilong Chen, Rui Xing   +10 more
wiley   +1 more source

Microbiome‐mediated plant‐soil feedbacks as a tool for resilient agriculture

iMetaOmics, Volume 3, Issue 3, September 2026.
Translating plant‐soil feedbacks (PSFs) into reliable agricultural management requires shifting from input‐dependent practices toward endogenous, process‐driven crop resilience. To bridge this gap, we propose a predictive framework centered on three strategic interventions: engineering the crop holobiont, diversifying the soil habitat, and deploying ...
Muhammad Asif, Hazrat Bilal, Min Xiao, Lei Dong, Wen‐Jun Li   +4 more
wiley   +1 more source

Additional file 2 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

, 2022
Additional file 2: Supplementary Figure 2. Average Good’s coverage and rarefaction curves of six microhabitats. a, Bulk, bulk soil; b, Rhizo, rhizosphere; c, Root, root endosphere; d, Stem, stem endosphere; e, Seed-P, parental seed endosphere; f, Seed ...
Xia Zhao (215170), Dongfang Zhao (504581), Hai-Lei Wei (520914), Xing Wang (154377), Xiaoxia Zhang (350565), Shanwen He (15258700), Yi-Nan Ma (7346108), Kaiji Liao (15258697), Hebao Guo (15258703)   +8 more
core   +1 more source

Compartment‐Specific Functional and Taxonomic Responses of Plant Growth‐Promoting Microbiomes Following Oxytetracycline Trunk Injection in Citrus

Journal of Sustainable Agriculture and Environment, Volume 5, Issue 3, September 2026.
ABSTRACT Huanglongbing (HLB), caused by Candidatus Liberibacter asiaticus, is the most destructive disease affecting citrus production worldwide. Trunk injection of oxytetracycline (OTC) is increasingly used to suppress the pathogen and improve tree performance, yet its ecological consequences for plant‐associated microbiomes remain poorly understood ...
Antonio Castellano‐Hinojosa, Jesús González‐López, Sarah L. Strauss, Ute Albrecht   +3 more
wiley   +1 more source