Results 31 to 40 of about 675,402 (336)

Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method [PDF]

, 2013
Corynebacterium pseudotuberculosis equi is a Gram-positive pathogenic bacterium which affects a variety of hosts. Besides the great economic losses it causes to horse-breeders, this organism is also known to be an important infectious agent to cattle and
Azarani, Azarani, Baird, Barakat, Biberstein, Braverman, Bustin, Chen, Chen, Colbert, Conesa, Efstratiou, Gaspar, Hantke, Jones, Jünemann, Lukashin, Martin, Meldrum, Muto, Nguyen, Nolden, Pacheco, Papp-Wallace, Patel, Paton, Pfaffl, Piddington, Pinho, Pinto, Ramos, Ramos, Richardson, Ruiz, Sambrook, Schulz, Sorek, Spier, Swiercz, Trost, Vliet, Weinberg, Westermann, Wong, Zerbino   +44 more
core   +1 more source

Compilation of 5S rRNA and 5S rRNA gene sequences

Nucleic Acids Research, 1988
The BERLIN RNA DATABANK as of December 31, 1987, contains a total of 509 sequences of 5S rRNAs or their genes, which is an increase of 45% over the last (1986) compilation (1). It covers sequences from 38 archaebacteria, 184 eubacteria, 14 plastids, 4 mitochondria, 258 eukaryotes and 11 eukaryotic pseudogenes. The BERLIN RNA DATABANK uses the format of
J, Wolters, V A, Erdmann
openaire   +3 more sources

Description and molecular phylogeny of a new and one known needle nematode of the genus Paralongidorus (Nematoda: Longidoridae) from grapevine in Portugal [PDF]

, 2018
A new and a known longidorid nematode, Paralongidorus lusitanicus n. sp. and Paralongidorus plesioepimikis, are described and illustrated from populations extracted from soil associated with grapevine (Vitis vinifera L.) from Escaroupim and Pó (central ...
Castillo, P, Gutiérrez-Gutiérrez, Carlos, Mota, Manuel, Palomares-Rius, E, Teixeira Santos, M   +4 more
core   +1 more source

Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules. [PDF]

PLoS ONE, 2016
PCR amplification and sequencing of phylogenetic markers, primarily Small Sub-Unit ribosomal RNA (SSU rRNA) genes, has been the paradigm for defining the taxonomic composition of microbiomes.
James E McDonald, Niels Larsen, Andrea Pennington, John Connolly, Corrin Wallis, David J Rooks, Neil Hall, Alan J McCarthy, Heather E Allison   +8 more
doaj   +1 more source

Complete mitochondrial genome sequence of Black Bengal goat (Capra hircus)

Mitochondrial DNA. Part B. Resources, 2019
The Black Bengal goat (Capra hircus), is a native breed found in Bangladesh, popular due to its economic contribution. Here, we report the complete mitochondrial genome sequence of Black Bengal goat.
Amam Siddiki, Masum Billah, Mohammad Alam, Kazi Shefaul Mulk Shawrob, Mahadia Kumkum, Sourav Saha, Muntaha Chowdhury, Atif H. Rahman, Michael Stear, Mohammad K. I. Khan, Gous Miah, AK M.Mollah, Abdul Baten   +12 more
doaj   +1 more source

Cloning and sequencing of the complicated rDNA gene family of Bos taurus

Czech Journal of Animal Science, 2006
The rDNA genes coding for ribosomal RNA (rRNA) in animals are repeat sequences with high GC content and complicated structure. Based on the sequences of human ribosomal DNA repeat unit and transcription unit and the long and accurate PCR method with LA ...
D. Tang, H. Jiang, Y. Zhang, Y. LI, X. Zhang, T. Zhou   +5 more
doaj   +1 more source

Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli. [PDF]

PLoS ONE, 2016
Escherichia coli contains seven rRNA operons, each consisting of the genes for three rRNAs (16S, 23S and 5S rRNA in this order) and one or two tRNA genes in the spacer between 16S and 23S rRNA genes and one or two tRNA genes in the 3' proximal region ...
Hiraku Takada, Tomohiro Shimada, Debashish Dey, M Zuhaib Quyyum, Masahiro Nakano, Akira Ishiguro, Hideji Yoshida, Kaneyoshi Yamamoto, Ranjan Sen, Akira Ishihama   +9 more
doaj   +1 more source

Identification of a structural motif of 23S rRNA interacting with 5S rRNA

FEBS Letters, 2001
To identify RNA motifs interacting with 5S rRNA, a systematic evolution of ligands by exponential enrichment experiment was applied. Some of the resulting RNA aptamers contained a consensus sequence similar to the sequence in the loop region of helix 89 of 23S rRNA.
Ko, J, Lee, Y Lee, Younghoon, Park, I, Cho, B   +3 more
openaire   +3 more sources

5 S rRNA: structure and interactions [PDF]

Biochemical Journal, 2003
5S rRNA is an integral component of the large ribosomal subunit in all known organisms. Despite many years of intensive study, the function of 5S rRNA in the ribosome remains unknown. Advances in the analysis of ribosome structure that have revealed the crystal structures of large ribosomal subunits and of the complete ribosome from various organisms ...
Mirosława Z Barciszewska, Volker A. Erdmann, Maciej Szymanski, Jan Barciszewski   +3 more
openaire   +2 more sources

The gyrB gene is a useful phylogenetic marker for exploring the diversity of flavobacterium strains isolated from terrestrial and aquatic habitats in Antarctica [PDF]

, 2011
Within the phylum Bacteroidetes, the gyrB gene, encoding for the B subunit of the DNA gyrase, has been used as phylogenetic marker for several genera closely related to Flavobacterium.
Peeters, Karolien, Willems, Anne
core   +1 more source