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Efficient seeding techniques for protein similarity search [PDF]

BIRD - ALBIO 13 (2008), 2008
We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to construct seeds with optimal sensitivity/selectivity trade-offs. We propose several different design methods and use them to construct several alphabets.We then perform an analysis of ...
Furletova, Eugenia, Gambin, Anna, Kucherov, Gregory, Lasota, Slawomir, Noé, Laurent, Roytberg, Mihkail, Szczurek, Ewa   +6 more
arxiv   +11 more sources

Oxidant and Antioxidant Profiling in Viscaria alpina Seed Populations Following the Temporal Dynamics of an Alpine Climate

Seeds, 2023
The adaptability of seed metabolism to different environmental conditions represents a crucial aspect to understand the effects of climate change on plant populations in wild environments.
Andrea Pagano, Enrico Doria, Andrea Mondoni, Fiona Jane White, Alma Balestrazzi, Anca Macovei   +5 more
doaj   +1 more source

Deep Learning for Soybean Monitoring and Management

Seeds, 2023
Artificial intelligence is more present than ever in virtually all sectors of society. This is in large part due to the development of increasingly powerful deep learning models capable of tackling classification problems that were previously untreatable.
Jayme Garcia Arnal Barbedo
doaj   +1 more source

Physiological Potential of Seeds of Handroanthus spongiosus (Rizzini) S. Grose (Bignoniaceae) Determined by the Tetrazolium Test

Seeds, 2023
Tetrazolium test (TZT) can quickly evaluate in detail the viability and vigor of seeds. This study aimed to determine the optimal conditions for conducting the TZT on seeds of Handroanthus spongiosus.
Jailton de Jesus Silva, Raquel Araujo Gomes, Maria Aparecida Rodrigues Ferreira, Claudineia Regina Pelacani, Bárbara França Dantas   +4 more
doaj   +1 more source

The Effects of Grafting on Plant, Fruit and Seed Quality in Cantaloupe (Cucumis melo L. var. cantalupensis) Melons

Seeds, 2023
Grafting techniques are being used to improve economically important horticultural crops including Cucumis melo L. This 2-year study was carried out at Cukurova University, Adana, Turkey.
Pınar Adıgüzel, Mihriban Namlı, Fildaus Nyirahabimana, İlknur Solmaz, Nebahat Sarı   +4 more
doaj   +1 more source

Evaluation of Training on Good Agronomic Practices for Seed Yam Production in Nigeria

Seeds, 2023
The second phase of the Yam Improvement for Income and Food Security in West Africa (YIIFSWA II) project was implemented through a strong collaboration between research and private sector.
Djana Babatima Mignouna, Beatrice Anim Aighewi, Norbert Maroya, Bolanle Akinribido, Morufat Balogun, Oluyemi T. Akintayo, Delphine Amah, Bola Awotide, Paul Martin Dontsop Nguezet, Tahirou Abdoulaye, Robert Asiedu, Victor Manyong   +11 more
doaj   +1 more source

Photothermal Quotient Describes the Combined Effects of Heat and Shade Stresses on Canola Seed Productivity

Seeds, 2023
There is evidence of the negative effects on canola seed yield caused by shading (SH) and high temperature stress (HT) separately, but the combined effect of both stresses has not been studied.
Gonzalo M. Rivelli, Nora V. Gomez, Anita I. Mantese, Daniel J. Miralles, Leonor G. Abeledo, Deborah P. Rondanini   +5 more
doaj   +1 more source

Acknowledgment to the Reviewers of Seeds in 2022

Seeds, 2023
High-quality academic publishing is built on rigorous peer review [...]
Seeds Editorial Office
doaj   +1 more source

Comparative Effect of Varieties and Types of Containers on Seed Germination and Seedling Growth of Geranium (Palergonium graveolens)

Seeds, 2023
Geranium (Pelargonium graveolens L’Hér.) is an important commercial horticultural plant extensively used in outdoor landscaping. Seed emergence has always remained a problem in geranium due to its hard seed nature.
Shagufta, Noor-un-Nisa, Fayaz Ali Jamali, Waqas Ahmad, Sami Ul-Allah, Niaz Ahmed Wahocho, Muzamil Farooque Jamali, Syed Adnan Shah   +7 more
doaj   +1 more source

Seed Morphology of Three Neotropical Orchid Species of the Lycaste Genus

Seeds, 2023
Neotropical orchids are vulnerable to extinction due to overharvesting, habitat destruction and climate change. However, a basic understanding of orchid seed biology to support conservation efforts is still lacking for most species.
Alejandra Alfaro Pinto, Craig McGill, Jayanthi Nadarajan, Fredy Archila Morales, Andrea Clavijo McCormick   +4 more
doaj   +1 more source