Comparison of network and sequence based cladograms.
, 2012 A comparison of interaction based and sequence based phylogenetic analysis. (a) The cladogram of the hierarchical clustering of the members from network similarity scores (Methods Section). (b) The cladogram of the sequence based phylogeny.
Saraswathi Vishveshwara (34348) +1 more
core +1 more source
Complete Genome Sequence of the Human Herpesvirus 6A Strain AJ from Africa Resembles Strain GS from North America. [PDF]
, 2015 The genome sequence of human herpesvirus 6A (HHV-6A) strain AJ was determined in a comparison of target enrichment and long-range PCR using next-generation sequencing methodologies.
Spyrou, MA +5 more
core +1 more source
The Shewanella oneidensis Fic enzyme SoFic targets the switch‐I region of EF‐Tu for AMPylation
FEBS Letters, EarlyView.Fic enzymes mediate diverse post‐translational modifications across all domains of life, including AMPylation. Prokaryotic EF‐Tu can be AMPylated and deAMPylated by the conserved Fic enzyme SoFic. Structural and biochemical approaches were used to characterize the effect of AMPylation on EF‐Tu, SoFic's enzymatic activities, and the enzyme‐target ...
Svenja Runge +6 more
wiley +1 more source
Comparison of sequence-dependent tiling array normalization approaches
BMC Bioinformatics, 2009 Background The detection of enriched DNA or RNA fragments by tiling microarrays has become more and more popular. These microarrays contain a high number of small probes covering genomic loci.
Vingron Martin, Chung Ho-Ryun
doaj +1 more source
Comparison of Sobol’ sequences in financial applications [PDF]
Monte Carlo Methods and Applications, 2019 Abstract Sobol’ sequences are widely used for quasi-Monte Carlo methods that arise in financial applications. Sobol’ sequences have parameter values called direction numbers, which are freely chosen by the user, so there are several implementations of Sobol’ sequence generators. The aim of this paper is to provide a comparative study of (
openaire +5 more sources
Comparison of reference genomic sequence datasets for mapping captured reads.
, 2015 Comparison of reference genomic sequence datasets for mapping captured reads.
Jane A. Coghill (791975) +7 more
core +1 more source
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison [PDF]
, 2004 Bartels D, Kespohl S, Albaum S, et al. BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics.
Kespohl, Sebastian +21 more
core +1 more source
Comparison of the nucleotide sequence of nad2 between phytophagous bugs and predatory bugs.
, 2023 Comparison of the nucleotide sequence of nad2 between phytophagous bugs and predatory bugs.
Yongqin Li (849675) +5 more
core +1 more source
Prospecting the protein design landscape
FEBS Letters, EarlyView.This review outlines the current state of various protein design approaches. We discuss the current possibilities enabled by recently released tools, highlight future avenues to pursue in protein design, and underscore the crucial role of key databases and resources for successful protein design workflows.
Jakob R. Riccabona +4 more
wiley +1 more source
Geometric Aspects of Biological Sequence Comparison
Journal of Computational Biology, 2009 Abstract We introduce a geometric framework suitable for studying the relationships among biological sequences. In contrast to previous works, our formulation allows asymmetric distances (quasi-metrics), originating from uneven weighting of strings, which may induce non-trivial partial orders on sets of biosequences.
Aleksandar Stojmirovic, Yi-Kuo Yu
openaire +4 more sources