Results 11 to 20 of about 142,788 (241)

A shared mucosal gut microbiota signature in primary sclerosing cholangitis before and after liver transplantation

Hepatology, EarlyView., 2022
In this study of the gut mucosal microbiota in primary sclerosing cholangitis (PSC), we found consistent microbiota features associated with PSC and recurrent PSC, PSC with inflammatory bowel disease and a persistent gut dysbiosis after liver transplantation Abstract Background and Aims Several characteristic features of the fecal microbiota have been ...
Mikal Jacob Hole, Kristin Kaasen Jørgensen, Kristian Holm, Peder R. Braadland, Malin Holm Meyer‐Myklestad, Asle Wilhelm Medhus, Dag Henrik Reikvam, Alexandra Götz, Krzysztof Grzyb, Kirsten Muri Boberg, Tom Hemming Karlsen, Martin Kummen, Johannes R. Hov   +12 more
wiley   +1 more source

Vibrio cholerae non-O1/non-O139 infection in fish in the Czech Republic

Veterinární Medicína, 2015
Pathogenic Vibrio cholerae non-O1/non-O139 was isolated from the fry of the Cardinal tetra, Paracheirodon axelrodi and in adult Raphael catfish, Platydoras costatus kept in aquarium conditions.
J. Rehulka, P. Petras, M. Marejkova, E. Aldova   +3 more
doaj   +1 more source

Phylogenetic analysis reveals an ancient gene duplication as the origin of the MdtABC efflux pump. [PDF]

, 2020
The efflux pumps from the Resistance-Nodulation-Division family, RND, are main contributors to intrinsic antibiotic resistance in Gram-negative bacteria. Among this family, the MdtABC pump is unusual by having two inner membrane components.
Górecki, Kamil, McEvoy, Megan M
core   +2 more sources

The emergence and fate of horizontally acquired genes in Escherichia coli [PDF]

, 2008
Bacterial species, and even strains within species, can vary greatly in their gene contents and metabolic capabilities. We examine the evolution of this diversity by assessing the distribution and ancestry of each gene in 13 sequenced isolates of ...
Marri, P.R., Ochman, H., Passel, M.W.J., van   +2 more
core   +4 more sources

Open-source genomic analysis of Shiga-toxin–producing E. coli O104:H4 [PDF]

, 2011
An outbreak caused by Shiga-toxin–producing Escherichia coli O104:H4 occurred in Germany in May and June of 2011, with more than 3000 persons infected. Here, we report a cluster of cases associated with a single family and describe an open-source genomic
Antoine Danchin, Cordesmeyer S, Dongfang Li, Fei Pu, Feng Xi, George F. Gao, Holger Rohde, Huanming Yang, Itoh Y, Jian Wang, Jianguo Xu, Jun Oh, Jun Wang, Junhua Li, Junjie Qin, Kuijper E, Liang Yang, Mark J. Pallen, Martin Aepfelbacher, Martin Christner, Meiru Zhao, Moritz Hentschke, Nicholas J. Loman, Peng Wang, Robin Kobbe, Ruifu Yang, Scheutz F, Sebastian Loos, Shenghui Li, Wentong Chen, Xiangna Zhao, Xianwei Yang, Yajun Song, Yangqing Peng, Yin Li, Yingrui Li, Yuanlin Guan, Yujun Cui, Zhaoxi Zhang, Zhong Cen   +39 more
core   +1 more source

Shifting national surveillance of Shigella infections toward geno‐serotyping by the development of a tailored Luminex assay and NGS workflow

MicrobiologyOpen, 2019
The phylogenetically closely related Shigella species and enteroinvasive Escherichia coli (EIEC) are responsible for millions of episodes of bacterial dysenteriae worldwide.
Eleonora Ventola, Bert Bogaerts, Sigrid C. J. De Keersmaecker, Kevin Vanneste, Nancy H. C. Roosens, Wesley Mattheus, Pieter‐Jan Ceyssens   +6 more
doaj   +1 more source

AKTIVITAS ANTIBAKTERI EKSTRAK DAUN SINGKONG (Manihot esculenta Crantz.) TERHADAP Shigella sp.

Jurnal Kesehatan, 2016
Aktivitas Antibakteri Ekstrak Daun Singkong (Manihot esculenta Crantz.) terhadap Shigella sp. Shigella sp merupakan salah satu bakteri Gram negatif penyebab utama penyakit diare yang menjadi penyebab utama kesakitan dan kematian pada anak di negara ...
Auronita Puspa Pratiwi
doaj   +1 more source

Shigella Draft Genome Sequences: Resources for Food Safety and Public Health. [PDF]

, 2017
Shigella is a major foodborne pathogen that infects humans and nonhuman primates and is the major cause of dysentery and reactive arthritis worldwide. This is the initial public release of 16 Shigella genome sequences from four species sequenced as part ...
Chen, Poyin, Gilpin, Brent, Huang, Bihua C, Kong, Nguyet, Weimer, Bart C, Weis, Allison M   +5 more
core   +1 more source

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe [PDF]

, 2012
Shigella are human-adapted Escherichia coli that have gained the ability to invade the human gut mucosa and cause dysentery1,2, spreading efficiently via low-dose fecal-oral transmission3,4. Historically, S.
A Mutreja, A Nastasi, A Saeed, A Stamatakis, AJ Drummond, Andrew Kitchen, D Cohen, D Genobile, DA Sack, Derek J Brown, Derek J Pickard, DK Karaolis, Dong Wook Kim, DR Zerbino, E Paradis, Edward C Holmes, F Yang, François-Xavier Weill, G Greub, G Morelli, GM Pupo, Gordon Dougan, H Li, H Li, H Vinh, H Vinh, H Vinh, HC Lewis, HJ Jeong, HL DuPont, J Parker, J Tang, J Winiecka-Krusnell, Jeremy J Farrar, JG Shepherd, John E Coia, Julian Parkhill, Jun Yu, Kathryn E Holt, KE Holt, KL Kotloff, LL Van de Verg, M Touchon, Nicholas R Thomson, PJ Sansonetti, R Ranjbar, RK Aziz, RW Kaminski, S Kurtz, Seon Young Choi, SR Harris, Stephen Baker, Su Hee Kim, T Shimada, Vartul Sangal, Wanderley D da Silveira   +55 more
core   +4 more sources

Alignment-free Genomic Analysis via a Big Data Spark Platform [PDF]

, 2021
Motivation: Alignment-free distance and similarity functions (AF functions, for short) are a well established alternative to two and multiple sequence alignments for many genomic, metagenomic and epigenomic tasks.
Cattaneo, Giuseppe, Giancarlo, Raffaele, Palini, Francesco, Petrillo, Umberto Ferraro   +3 more
core   +2 more sources