Results 221 to 230 of about 283,388 (253)

Short-Read RNA-Seq

RNA sequencing (RNA-Seq) has emerged as a powerful and versatile tool for the comprehensive analysis of transcriptomes and has been widely used to investigate gene expression, copy number variation, alternative splicing, and novel transcript discovery. This chapter outlines the methodology for conducting short-read RNA-Seq, starting from RNA enrichment
Rong, Hu, Md N, Islam, Rency S, Varghese, Habtom W, Ressom   +3 more
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Profiling Short Tandem Repeats from Short Reads

2013
Short tandem repeats (STRs), also known as microsatellites, have a wide range of applications, including medical genetics, forensics, and population genetics. High-throughput sequencing has the potential to profile large numbers of STRs, but cumbersome gapped alignment and STR-specific noise patterns hamper this task. We recently developed an algorithm,
Melissa, Gymrek, Yaniv, Erlich
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Hardware Acceleration of Short Read Mapping

2012 IEEE 20th International Symposium on Field-Programmable Custom Computing Machines, 2012
Bioinformatics is an emerging field with seemingly limitless possibilities for advances in numerous areas of research and applications. We propose a scalable FPGA-based solution to the short read mapping problem in DNA sequencing, which greatly accelerates the task of aligning short length reads to a known reference genome.
Corey B. Olson, Maria Kim, Cooper Clauson, Boris Kogon, Carl Ebeling, Scott Hauck, Walter L. Ruzzo   +6 more
openaire   +1 more source

Short Read Alignment Using SOAP2

2016
Next-generation sequencing (NGS) technologies have rapidly evolved in the last 5 years, leading to the generation of millions of short reads in a single run. Consequently, various sequence alignment algorithms have been developed to compare these reads to an appropriate reference in order to perform important downstream analysis.
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Short-Read Mapping

2011
Present-day high-throughput sequencing techniques routinely produce a flood of genomic information (as high as 540-600 Gbases/machine/week for some technologies). The output comes under the form of short sequence reads; in a typical resequencing application (where the knowledge of a reference genome for the organism being studied is assumed) the ...
openaire   +1 more source

Short Read Mapping for Exome Sequencing

2013
Mapping short reads to the reference genome is very often the prerequisite for applications utilizing the next-generation sequencing technologies. A dozen of software tools developed for this purpose have been widely used. But many practical issues remained when utilizing them to build a computational pipeline for downstream analyses.
Zhang, X, Bao, S, Zhou, X, Wang, BB, Song, Y   +4 more
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Short-term storage in reading

Journal of Verbal Learning and Verbal Behavior, 1984
Five studies were carried out to analyze the role of short-term storage in the reading of organized text. In the studies the subject's reading was interrupted with a distractor task to remove the information the subject was carrying in short-term storage. The effect of the interruption was to slow down subsequent reading.
Murray Glanzer, Beth Fischer, David Dorfman   +2 more
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Reading a short story

2023
Andrew Bennett, Nicholas Royle
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Probably Correct: Rescuing Repeats with Short and Long Reads

Genes, 2021
Monika Cechova
exaly  

Integrated hybrid de novo assembly technologies to obtain high-quality pig genome using short and long reads

Briefings in Bioinformatics, 2021
Hao Liu, Chenguang Diao, Pengju Zhao
exaly