Results 11 to 20 of about 203,392 (300)
Coded Shotgun Sequencing [PDF]
IEEE Journal on Selected Areas in Information Theory, 2022 Most DNA sequencing technologies are based on the shotgun paradigm: many short reads are obtained from random unknown locations in the DNA sequence. A fundamental question, studied in arXiv:1203.6233, is what read length and coverage depth (i.e., the total number of reads) are needed to guarantee reliable sequence reconstruction. Motivated by DNA-based
Aditya Narayan Ravi +2 more
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Gut Bacteriomes and Ecological Niche Divergence: An Example of Two Cryptic Gastropod Species
Biology, 2023 Symbiotic microorganisms may provide their hosts with abilities critical to their occupation of microhabitats. Gut (intestinal) bacterial communities aid animals to digest substrates that are either innutritious or toxic, as well as support their ...
Elizaveta Gafarova +8 more
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Microorganisms, 2022 Feta is the most renowned protected designation of origin (PDO) white brined cheese produced in Greece. The fine organoleptic characteristics and the quality of Feta rely on, among other factors, its overall microbial ecosystem.
Konstantinos Papadimitriou +8 more
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Biology, 2022 Tolerance breeding through genetic engineering, sequence and omics analyses, and gene identification processes are widely used to synthesize biofuels.
Ming-Yue Huang +5 more
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Taxonomy of anaerobic digestion microbiome reveals biases associated with the applied high throughput sequencing strategies [PDF]
, 2018 In the past few years, many studies investigated the anaerobic digestion microbiome by means of 16S rRNA amplicon sequencing. Results obtained from these studies were compared to each other without taking into consideration the followed procedure for ...
Angelidaki, Irini +4 more
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Shotgun reconstruction in the hypercube [PDF]
Random Structures & Algorithms, 2021 AbstractMossel and Ross raised the question of when a random coloring of a graph can be reconstructed from local information, namely, the colorings (with multiplicity) of balls of given radius. In this article, we are concerned with random 2‐colorings of the vertices of the ‐dimensional hypercube, or equivalently random Boolean functions.
Michal Przykucki +2 more
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Identification of pathogen(s) in infectious diseases using shotgun metagenomic sequencing and conventional culture: a comparative study [PDF]
PeerJ, 2021 Background Early and accurate diagnosis of microorganism(s) is important to optimize antimicrobial therapy. Shotgun metagenomic sequencing technology, an unbiased and comprehensive method for pathogen identification, seems to potentially assist or even ...
Huan Chen +9 more
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Optimal Assembly for High Throughput Shotgun Sequencing [PDF]
, 2013 We present a framework for the design of optimal assembly algorithms for shotgun sequencing under the criterion of complete reconstruction. We derive a lower bound on the read length and the coverage depth required for reconstruction in terms of the ...
Bresler, Guy +2 more
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Biomolecules, 2021 Banana Fusarium wilt, caused by the fungus pathogen Fusarium oxysporum f. sp. cubense (Foc), is a devastating disease that causes tremendous reductions in banana yield worldwide. Secreted proteins can act as pathogenicity factors and play important roles
Yanqiu He +5 more
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Shotgun Proteomics in Neuroscience [PDF]
Neuron, 2009 Mass spectrometry-based proteomics is increasingly used to address basic and clinical questions in biomedical research through studies of differential protein expression, protein-protein interactions, and posttranslational modifications. The complex structural and functional organization of the human brain warrants the application of high-throughput ...
Liao, Lujian +2 more
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