Results 41 to 50 of about 75,410 (157)

R Classes and Methods for SNP Array Data [PDF]

, 2009
The Bioconductor project is an "open source and open development software project for the analysis and comprehension of genomic data" (1), primarily based on the R programming language. Infrastructure packages, such as Biobase, are maintained by Bioconductor core developers and serve several key roles to the broader community of Bioconductor software ...
Robert B, Scharpf, Ingo, Ruczinski
openaire   +2 more sources

Development and Evaluation of a High-Throughput Single-Nucleotide Polymorphism Array for Large Yellow Croaker (Larimichthys crocea)

Frontiers in Genetics, 2020
High-density single-nucleotide polymorphism (SNP) genotyping array is an essential tool for genetic analyses of animals and plants. Large yellow croaker (Larimichthys crocea) is one of the most commercially important marine fish species in China ...
Tao Zhou, Baohua Chen, Qiaozhen Ke, Qiaozhen Ke, Ji Zhao, Fei Pu, Yidi Wu, Lin Chen, Zhixiong Zhou, Yulin Bai, Ying Pan, Ying Pan, Jie Gong, Weiqiang Zheng, Peng Xu, Peng Xu   +15 more
doaj   +1 more source

Development and application of a 1K functional liquid chip for lactation performance in Bactrian camels

Frontiers in Veterinary Science
IntroductionThe advancement of high-throughput, high-quality, flexible, and cost-effective genotyping platforms is crucial for the progress of dairy breeding in Bactrian camels.
Lili Guo, Lili Guo, Lili Guo, Lema Dao, Bin Liu, Jingyu Wang, Zaixia Liu, Zaixia Liu, Fengying Ma, Fengying Ma, Bielige Morigen, Chencheng Chang, Chencheng Chang, Yinbatu Bai, Yinbatu Bai, Yaqiang Guo, Yaqiang Guo, Caixia Shi, Caixia Shi, Junwei Cao, Junwei Cao, Wenguang Zhang, Wenguang Zhang, Wenguang Zhang   +23 more
doaj   +1 more source

High concordance between next-generation sequencing and single-nucleotide polymorphism array in preimplantation genetic testing for aneuploidy

Clinical and Experimental Obstetrics & Gynecology, 2022
Background: This study aimed to compare the use of next-generation sequencing (NGS) and single-nucleotide polymorphism (SNP) array in preimplantation genetic testing for aneuploidy (PGT-A) in the same blastocyst.
Zhanhui Ou, Zhiheng Chen, Yu Deng, Ling Sun   +3 more
doaj   +1 more source

Development of a next generation SNP genotyping array for wheat

Plant Biotechnology Journal, 2023
Summary High‐throughput genotyping arrays have provided a cost‐effective, reliable and interoperable system for genotyping hexaploid wheat and its relatives. Existing, highly cited arrays including our 35K Wheat Breeder's array and the Illumina 90K array were designed based on a limited amount of varietal sequence
Amanda J. Burridge, Mark Winfield, Alexandra Przewieslik-Allen, Keith J. Edwards, Imteaz Siddique, Ruth Barral-Arca, Simon Griffiths, Shifeng Cheng, Zejian Huang, Cong Feng, Susanne Dreisigacker, Alison R. Bentley, Gina Brown-Guedira, Gary L. Barker   +13 more
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Clinical application of single nucleotide polymorphism array in prenatal diagnosis: Experience with 8753 samples.

PLoS ONE
BackgroundSingle nucleotide polymorphism (SNP) array has been applied to prenatal diagnosis. This study aimed to assess the clinical significance of SNP array in diagnosing fetal chromosomal anomalies based on our experience.MethodsA total of 8753 ...
Li Wen, Yanzhen Zhang, Wen Zhang, Aifen Mao, Xiangjuan Li   +4 more
doaj   +1 more source

Development and validation of a Pacific Abalone (Haliotis discus hannai) custom 60K SNP array

Aquaculture Reports
The Pacific abalone (Haliotis discus hannai) is a commercially important abalone species native to South Korea, which is immensely popular as a seafood delicacy.
Jeong Woen Shin, Sangwon Yoon, Seung Hwan Lee, Jung-Youn Park, Jong-Won Park, Hyun-Chul Kim, Woo-Jin Kim, Young-Ok Kim, Dongwon Seo, Eun Soo Noh   +9 more
doaj   +1 more source

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer

BMC Genomics, 2007
Background Cervical carcinoma develops as a result of multiple genetic alterations. Different studies investigated genomic alterations in cervical cancer mainly by means of metaphase comparative genomic hybridization (mCGH) and microsatellite marker ...
Kenter Gemma G, Gorter Arko, Knijnenburg Jeroen, Szuhai Karoly, van Wezel Tom, Oosting Jan, Kloth Judith N, Fleuren Gert, Jordanova Ekaterina S   +8 more
doaj   +1 more source

Tumor Touch Imprints as Source for Whole Genome Analysis of Neuroblastoma Tumors. [PDF]

PLoS ONE, 2016
INTRODUCTION:Tumor touch imprints (TTIs) are routinely used for the molecular diagnosis of neuroblastomas by interphase fluorescence in-situ hybridization (I-FISH).
Clemens Brunner, Bettina Brunner-Herglotz, Andrea Ziegler, Christian Frech, Gabriele Amann, Ruth Ladenstein, Inge M Ambros, Peter F Ambros   +7 more
doaj   +1 more source

Suffix Arrays for Spaced-SNP Databases

CoRR, 2014
Single-nucleotide polymorphisms (SNPs) account for most variations between human genomes. We show how, if the genomes in a database differ only by a reasonable number of SNPs and the substrings between those SNPs are unique, then we can store a fast compressed suffix array for that database.
openaire   +2 more sources