Results 51 to 60 of about 7,116,394 (358)

Comparison of kinship‐identification methods for robust stock assessment using close‐kin mark–recapture data for Pacific bluefin tuna

Population Ecology, EarlyView.
In this study, we compared three methods for kinship identification using different algorithms in samples of wild Pacific bluefin tuna and generated genotyping data. The three methods resulted in different numbers of inferred kinship pairs for both generated and actual data. Particularly for the half‐sibling pairs, considerable number of false‐positive
Yohei Tsukahara, Reiichiro Nakamichi, Aiko Matsuura, Tetsuya Akita, Atushi Fujiwara, Nobuaki Suzuki   +5 more
wiley   +1 more source

Standardizing workflows in imaging transcriptomics with the abagen toolbox

eLife, 2021
Gene expression fundamentally shapes the structural and functional architecture of the human brain. Open-access transcriptomic datasets like the Allen Human Brain Atlas provide an unprecedented ability to examine these mechanisms in vivo; however, a lack
Ross D Markello, Aurina Arnatkeviciute, Jean-Baptiste Poline, Ben D Fulcher, Alex Fornito, Bratislav Misic   +5 more
doaj   +1 more source

A histidine‐rich extension of the mitochondrial F0 subunit ATP6 from the ice worm Mesenchytraeus solifugus increases ATP synthase activity in bacteria

FEBS Letters, EarlyView.
The glacier ice worm Mesenchytraeus solifugus survives year‐round at 0 °C. Its ATP6 subunit, which forms a regulatory component of the proton pore in mitochondrial ATP synthase, has a carboxy‐terminal extension not found in any other organism examined to date. Here, we show that fusion of this extension to the homologous AtpB protein in E. coli results
Truman Dunkley, Daniel H. Shain, Eric A. Klein   +2 more
wiley   +1 more source

To Dereplicate or Not To Dereplicate?

mSphere, 2020
Metagenome-assembled genomes (MAGs) expand our understanding of microbial diversity, evolution, and ecology. Concerns have been raised on how sequencing, assembly, binning, and quality assessment tools may result in MAGs that do not reflect single ...
Jacob T. Evans, Vincent J. Denef
doaj   +1 more source

Elucidation of interface interactions between a dehydratase domain and an acyl carrier protein in cremimycin polyketide synthase

FEBS Letters, EarlyView.
In modular polyketide synthases, the dehydratase (DH) domain catalyzes the dehydration reaction of the β‐hydroxyacyl unit attached to the cognate acyl carrier protein (ACP) domain. However, it is unclear how DH interacts with ACP during the reaction. In this study, we identified DH–ACP interface residues, providing the first detailed insights into DH ...
Kaede Kotagiri, Haruka Tachibana, Daisuke Kawasaki, Taichi Chisuga, Toma Kashima, Shinya Fushinobu, Fumitaka Kudo, Tadashi Eguchi, Akimasa Miyanaga   +8 more
wiley   +1 more source

Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data

, 2004
DNA degradation, low DNA concentrations and primer-site mutations may result in the incorrect assignment of microsatellite genotypes, potentially biasing population genetic analyses.
C. Oosterhout, William F. Hutchinson, Derek P. M. Wills, P. Shipley   +3 more
semanticscholar   +1 more source

Gephi: An Open Source Software for Exploring and Manipulating Networks

International Conference on Web and Social Media, 2009
Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration.
Mathieu Bastian, Sebastien Heymann, Mathieu Jacomy   +2 more
semanticscholar   +1 more source

Ablation of LRP6 in alpha‐smooth muscle actin‐expressing cells abrogates lung inflammation and fibrosis upon bleomycin‐induced lung injury

FEBS Letters, EarlyView.
Low‐density lipoprotein receptor‐related protein 6 (LRP6) is a key receptor for the Wnt antagonist Dickkopf1 (DKK1). DKK1 protein expression is induced in a bleomycin (BLM)‐induced lung injury model. We show that DKK1 induces proinflammatory and profibrotic genes in lung fibroblasts.
Eun‐Ah Sung, Mikhail G. Dozmorov, SuJeong Song, Theingi Aung, Min Hee Park, Patricia J. Sime, Wook‐Jin Chae   +6 more
wiley   +1 more source

Towards Quantum Software Requirements Engineering [PDF]

arXiv, 2023
Quantum software engineering (QSE) is receiving increasing attention, as evidenced by increasing publications on topics, e.g., quantum software modeling, testing, and debugging. However, in the literature, quantum software requirements engineering (QSRE) is still a software engineering area that is relatively less investigated.
arxiv  

Software testing and software fault injection [PDF]

2015 10th International Conference on Design & Technology of Integrated Systems in Nanoscale Era (DTIS), 2015
Reliability is one of the most important characteristics of the system quality. It is defined as the probability of failure-free operation of system for a specified period of time in a specified environment. For microprocessor based systems, reliability includes both software and hardware reliability.
Kooli, Maha, Bosio, Alberto, Benoit, Pascal, Torres, Lionel   +3 more
openaire   +3 more sources