Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules
The soil microbiome represents one of the most complex microbial communities on the planet, encompassing thousands of taxa and metabolic pathways, rendering holistic analyses computationally intensive and difficult.
Dan Naylor +6 more
doaj +1 more source
Trends in Microbial Community Composition and Function by Soil Depth
Microbial communities play important roles in soil health, contributing to processes such as the turnover of organic matter and nutrient cycling. As soil edaphic properties such as chemical composition and physical structure change from surface layers to
Dan Naylor, Ryan McClure, Janet Jansson
doaj +1 more source
TGFβ/BMP immune signaling affects abundance and function of C. elegans gut commensals. [PDF]
The gut microbiota contributes to host health and fitness, and imbalances in its composition are associated with pathology. However, what shapes microbiota composition is not clear, in particular the role of genetic factors.
Berg, Maureen +5 more
core +2 more sources
From metagenomics to the metagenome: Conceptual change and the rhetoric of translational genomic research [PDF]
As the international genomic research community moves from the tool-making efforts of the Human Genome Project into biomedical applications of those tools, new metaphors are being suggested as useful to understanding how our genes work – and for ...
Huss, John Edward, Juengst, Eric Thomas
core +1 more source
Trophic Regulations of the Soil Microbiome
The soil microbiome regulates vital ecosystem functions ranging from primary production to soil carbon sequestration. Yet, we have only begun to understand the factors regulating the soil microbiome. While the importance of abiotic factors is increasingly recognized, the roles of trophic regulations in driving the structure and function of the soil ...
Thakur, M.P., Geisen, S.
openaire +3 more sources
Metagenomic analysis of dental calculus in ancient Egyptian baboons [PDF]
Dental calculus, or mineralized plaque, represents a record of ancient biomolecules and food residues. Recently, ancient metagenomics made it possible to unlock the wealth of microbial and dietary information of dental calculus to reconstruct oral ...
Bramanti, Barbara +7 more
core +1 more source
Metallic micronutrients are associated with the structure and function of the soil microbiome
The relationship between metallic micronutrients and soil microorganisms, and thereby soil functioning, has been little explored. Here, we investigate the relationship between metallic micronutrients (Fe, Mn, Cu, Zn, Mo and Ni) and the abundance ...
Zhongmin Dai +11 more
doaj +1 more source
Harnessing indigenous soil microbial suppression is an emerging strategy for managing soilborne plant diseases. Soil moisture is a vital factor in soil microbiomes, but its role in the regulation of microbial suppression is poorly understood.
Cunwu Guo +13 more
doaj +1 more source
Functional Traits Co-Occurring with Mobile Genetic Elements in the Microbiome of the Atacama Desert [PDF]
Mobile genetic elements (MGEs) play an essential role in bacterial adaptation and evolution. These elements are enriched within bacterial communities from extreme environments. However, very little is known if specific genes co-occur with MGEs in extreme
Airo, Alessandro +4 more
core +1 more source
Rhizosphere Microbiome Regulates the Growth of Mustard under Organic Greenhouse Cultivation
Organic cultivation can improve soil fertility and biodiversity through the preservation of soil organic matter. Meanwhile, greenhouse cultivation can provide a controlled environment and therefore enables the management of every aspect of plant growth ...
Ting-Chung Liu +3 more
doaj +1 more source

