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Semantic Source Code Models Using Identifier Embeddings

open access: yes, 2019
The emergence of online open source repositories in the recent years has led to an explosion in the volume of openly available source code, coupled with metadata that relate to a variety of software development activities.
Efstathiou, Vasiliki   +1 more
core   +1 more source

The power of microRNA regulation—insights into immunity and metabolism

open access: yesFEBS Letters, EarlyView.
MicroRNAs are emerging as crucial regulators at the intersection of metabolism and immunity. This review examines how miRNAs coordinate glucose and lipid metabolism while simultaneously modulating T‐cell development and immune responses. Moreover, it highlights how cutting‐edge artificial intelligence applications can identify miRNA biomarkers ...
Stefania Oliveto   +2 more
wiley   +1 more source

Summarizing Source Code using a Neural Attention Model

open access: yesAnnual Meeting of the Association for Computational Linguistics, 2016
High quality source code is often paired with high level summaries of the computation it performs, for example in code documentation or in descriptions posted in online forums.
Srini Iyer   +3 more
semanticscholar   +1 more source

Automatic Source Code Summarization with Extended Tree-LSTM [PDF]

open access: yesIEEE International Joint Conference on Neural Network, 2019
Neural machine translation models are used to automatically generate a document from given source code since this can be regarded as a machine translation task.
Yusuke Shido   +4 more
semanticscholar   +1 more source

Social context prevents heat hormetic effects against mutagens during fish development

open access: yesFEBS Letters, EarlyView.
This study shows that sublethal heat stress protects fish embryos against ultraviolet radiation, a concept known as ‘hormesis’. However, chemical stress transmission between fish embryos negates this protective effect. By providing evidence for the mechanistic molecular basis of heat stress hormesis and interindividual stress communication, this study ...
Lauric Feugere   +5 more
wiley   +1 more source

Decoding the dual role of autophagy in cancer through transcriptional and epigenetic regulation

open access: yesFEBS Letters, EarlyView.
Transcriptional and epigenetic regulation controls autophagy, which exerts context‐dependent effects on cancer: Autophagy suppresses tumorigenesis by maintaining cellular homeostasis or promotes tumor progression by supporting survival under stress. In this “In a Nutshell” article, we explore the intricate mechanisms of the dual function of autophagy ...
Young Suk Yu, Ik Soo Kim, Sung Hee Baek
wiley   +1 more source

Protonophore activity of short‐chain fatty acids induces their intracellular accumulation and acidification

open access: yesFEBS Letters, EarlyView.
The protonated form of butyrate, as well as other short‐chain fatty acids (SCFAs), is membrane permeable. In acidic extracellular environments, this can lead to intracellular accumulation of SCFAs and cytosolic acidification. This phenomenon will be particularly relevant in acidic environments such as the large intestine or tumor microenvironments ...
Muwei Jiang   +2 more
wiley   +1 more source

L’écriture collective du code source informatique

open access: yesRevue d'anthropologie des connaissances, 2012
This article analyzes the collective writing of software source code. Software source code is a set of textual documents that formally specify the behavior of software – its script. The article draws on work in the sociology of science and technology and
Stéphane Couture
doaj   +1 more source

OpenMolcas: From source code to insight.

open access: yesJournal of Chemical Theory and Computation, 2019
In this article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS ...
Ignacio Fernández Galván   +62 more
semanticscholar   +1 more source

A stepwise emergence of evolution in the RNA world

open access: yesFEBS Letters, EarlyView.
How did biological evolution emerge from chemical reactions? This perspective proposes a gradual scenario of self‐organization among RNA molecules, where catalytic feedback on random mixtures plays the central role. Short oligomers cross‐ligate, and self‐assembly enables heritable variations. An event of template‐externalization marks the transition to
Philippe Nghe
wiley   +1 more source

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