Results 181 to 190 of about 1,329,617 (295)

CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site annotation [PDF]

, 2010
Gong‐Hua Li, Jing‐Fei Huang
openalex   +1 more source

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

FEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei, Fredrik Orädd, Konstantinos Magkakis, Magnus Andersson   +3 more
wiley   +1 more source

Redefining text-to-SQL metrics by incorporating semantic and structural similarity. [PDF]

Sci Rep
Pinna G, Perezhohin Y, Manzoni L, Castelli M, De Lorenzo A.   +4 more
europepmc   +1 more source

Incorporating structural similarity into a scoring function to enhance the prediction of binding affinities. [PDF]

J Cheminform, 2021
Ji B, He X, Zhang Y, Zhai J, Man VH, Liu S, Wang J.   +6 more
europepmc   +1 more source

Additional file 2: of GMASS: a novel measure for genome assembly structural similarity

, 2019
Daehong Kwon, Jongin Lee, Jaebum Kim
openalex   +1 more source

Promiscuous stimulation of HSP70 ATPase activity by parasite‐derived J‐domains

FEBS Open Bio, EarlyView.
The malaria parasite Plasmodium falciparum exports three highly homologous yet functionally divergent J‐domain proteins into human erythrocytes. Here, we show that J‐domains isolated from all three proteins effectively stimulate the ATPase activity of both endogenous host and exported parasite HSP70 chaperones.
Julian Barth, Moritz Koch, Le‐Han Rössner, Johanna Eichhorn, Denys Pogoryelov, Matthias P. Mayer, Jude M. Przyborski   +6 more
wiley   +1 more source

Evaluating sequence and structural similarity metrics for predicting shared paralog functions. [PDF]

NAR Genom Bioinform
Dennler O, Ryan CJ.
europepmc   +1 more source

Structural similarities between some common fluorophores used in biology and marketed drugs, endogenous metabolites, and natural products [PDF]

, 2019
Steve O’Hagan, Douglas B. Kell
openalex   +1 more source

Structural Similarities between Sam and Atp Recognition Motifs and Detection of Atp Binding in a Sam Binding DNA Methyltransferase

, 2023
Santhosh Sankar, Preeti Preeti, Kavya Ravikumar, Amrendra Kumar, Yedu Prasad, Desirazu N. Rao, H.S. Savithri, Nagasuma Chandra   +7 more
openalex   +1 more source

Chameleon sequences reveal structural effects in proteins representing micelle‐like distribution of hydrophobicity

FEBS Open Bio, EarlyView.
Amino acids sequence of two different proteins with the same sequence (chameleon sequence—black boxes) represent in 3D structure of the proteins different secondary structures: HHHH—helical and BBB—Beta‐structural. The chains folded in water environment adopt different III‐order structures in which the chameleon fragments appear to adopt similar status
Irena Roterman, Katarzyna Stapor, Leszek Konieczny, Krzysztof Gądek, Piotr Nowakowski   +4 more
wiley   +1 more source