Results 91 to 100 of about 4,379 (204)
Better quality score compression through sequence-based quality smoothing
BMC Bioinformatics, 2019 Motivation Current NGS techniques are becoming exponentially cheaper. As a result, there is an exponential growth of genomic data unfortunately not followed by an exponential growth of storage, leading to the necessity of compression. Most of the entropy
Yoshihiro Shibuya, Matteo Comin
doaj +1 more source
Technologies for engineering repetitive DNA
Quantitative Biology, Volume 14, Issue 3, September 2026.Abstract Repetitive DNA, a fundamental architectural element of genomes, is widespread across organisms and comprises about 54% of the human genome. With advances in long‐read sequencing and bioinformatics approaches, highly repetitive sequences can now be characterized in depth.
Shuting Ma, Yali Cui, Yi Wu
wiley +1 more source
MUMmer4: A fast and versatile genome alignment system.
PLoS Computational Biology, 2018 The MUMmer system and the genome sequence aligner nucmer included within it are among the most widely used alignment packages in genomics. Since the last major release of MUMmer version 3 in 2004, it has been applied to many types of problems including ...
Guillaume Marçais +5 more
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Rust resistance in barley accessions County and BHS248
Crop Science, Volume 66, Issue 4, July/August 2026.Abstract Rusts can cause devastating losses of barley (Hordeum vulgare L.) in epidemic years. Several reactions to Puccinia hordei (Rph) genes/quantitative trait loci (QTLs) for resistance to barley leaf rust (BLR) have been documented. In contrast, there is a dearth of characterized resistance sources against stem rust (SR) caused by Puccinia graminis.
Kelly Jordaan +7 more
wiley +1 more source
The Suffix Tree Data Structure: Theory and Practice [PDF]
openLa tesi affronta lo studio delle strutture dati per l’indicizzazione di stringhe, concentrandosi sui Suffix Tree e, in particolarmente sulla sua variante compressa: Compressed Suffix Tree.
YE, XIAOJUN
core
Simple Algorithm to Maintain Dynamic Suffix Array for Text Indexes [PDF]
, 2011 Dynamic suffix array is a suffix data structure that reflects various patterns in a mutable string. Dynamic suffix array is rather convenient for performing substring search queries over database indexes that are frequently modified.
Urbanovich, Dmitry +3 more
core
An elegant algorithm for the construction of suffix arrays
Journal of Discrete Algorithms, 2014 The suffix array is a data structure that finds numerous applications in string processing problems for both linguistic texts and biological data. It has been introduced as a memory efficient alternative for suffix trees. The suffix array consists of the sorted suffixes of a string.
Sanguthevar Rajasekaran, Marius Nicolae
openaire +3 more sources
Human Brain Mapping, Volume 47, Issue 10, July 2026.Passive working memory performance is associated with intrinsic connectivity among dorsal attention, control, and sensorimotor subnetworks, suggesting a baseline functional scaffolding for individual differences. ABSTRACT Passive working memory (WM) is rarely detectable because it is thought to rely less on persistent neural firing, leaving a minimal ...
Yun Tian +4 more
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Revista Ingenierías Universidad de Medellín, 2010 El avance en la investigación de los arreglos de sufijos permitió en el año 2003 el planteamiento de tres algoritmos de tiempo lineal para la generación de tales estructuras.
César Alejandro Arango Palacio +1 more
doaj
Allergy, Volume 81, Issue 7, Page 2417-2434, July 2026.Integrated methylome–transcriptome–microbiome analysis of AD skin identified thousands of DMRs. Rho GTPase signaling and actin–junctional programs emerged as central hubs integrating immune, epithelial, and microbial interactions in the pathogenesis of atopic dermatitis.
Tiina Skoog +22 more
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