Results 81 to 90 of about 37,210 (201)

Speeding up index construction with GPU for DNA data sequences [PDF]

, 2011
The advancement of technology in scientific community has produced terabytes of biological data.This datum includes DNA sequences.String matching algorithm which is traditionally used to match DNA sequences now takes much longer time to execute because ...
Abdul Rashid, Nur’aini, Rahmaddiansyah, ,   +1 more
core  

Integrated Methylome–Transcriptome Analysis Reveals Epigenomic Remodeling and Rho GTPase–Linked Immune–Epithelial Crosstalk in Atopic Dermatitis

Allergy, EarlyView.
Integrated methylome–transcriptome–microbiome analysis of AD skin identified thousands of DMRs. Rho GTPase signaling and actin–junctional programs emerged as central hubs integrating immune, epithelial, and microbial interactions in the pathogenesis of atopic dermatitis.
Tiina Skoog, Ying Yang, Peter Olah, Shintaro Katayama, Piia Karisola, Catherine Smith, Stephan Weidinger, Jonathan Barker, Antti Lauerma, Björn Andersson, Bernhard Homey, Nanna Fyhrquist, Juha Kere, Harri Alenius, MAARS Consortium, Francesca Levi‐Schaffer, Dario Greco, Stefanie Prast‐Nielsen, Vassili Soumelis, Sophia Tsoka, Jens M. Schröder, Frank O. Nestle, Philippe Hupé   +22 more
wiley   +1 more source

Indexing Arbitrary-Length k-Mers in Sequencing Reads.

PLoS ONE, 2015
We propose a lightweight data structure for indexing and querying collections of NGS reads data in main memory. The data structure supports the interface proposed in the pioneering work by Philippe et al.
Tomasz Kowalski, Szymon Grabowski, Sebastian Deorowicz   +2 more
doaj   +1 more source

Implementing the Just Transition Fund: Patterns of Multilevel Governance

JCMS: Journal of Common Market Studies, EarlyView.
Abstract Multilevel governance has been a central feature of EU policy‐making, especially in the context of cohesion policy, where the concept was extensively theorised. Building on insights from long‐standing scientific research on the topic, this article explores the implementation of the recently established Just Transition Fund (JTF), focusing on ...
Ekaterina Domorenok, Beniamino Masi
wiley   +1 more source

The Contemporary Debate on Secularization and Its Cross‐National Variation: A Systematization Through Topic Modeling

Journal for the Scientific Study of Religion, EarlyView.
ABSTRACT Secularization is a key concept in the social scientific study of religion, yet its meaning remains ambiguous due to varied definitions produced in the literature. This article aims to provide a data‐driven systematization of the debate on religious change by analyzing 1638 academic articles published between 2001 and 2022 using structural ...
Valeria Rainero, Ruud Luijkx
wiley   +1 more source

Seeing the Speaker's Face Enhances Second Language Shadowing: Neural and Behavioral Evidence

Language Learning, EarlyView.
Abstract This functional magnetic resonance imaging (fMRI) study investigated how facial cues influence second language (L2) shadowing among 42 Japanese learners of English. Participants completed four conditions that varied by task type (listening vs. shadowing) and visual input (face vs. mosaic).
Hyeonjeong Jeong, Shuhei Kadota, Mayumi Kajiura, Hiroshi Nakanishi, Koji Kazai, Mariko Kawasaki, Yoko Nakano, Naoya Hase   +7 more
wiley   +1 more source

External memory BWT and LCP computation for sequence collections with applications

Algorithms for Molecular Biology, 2019
Background Sequencing technologies produce larger and larger collections of biosequences that have to be stored in compressed indices supporting fast search operations.
Lavinia Egidi, Felipe A. Louza, Giovanni Manzini, Guilherme P. Telles   +3 more
doaj   +1 more source

Musical Mereology

Pacific Philosophical Quarterly, EarlyView.
ABSTRACT I develop an axiomatic system of mereology that accounts for the ways in which musical works can be said to have parts. I distinguish two fundamental modes of composition that musical works exhibit: successive composition, whereby sound events are concatenated in time, and simultaneous composition, whereby sound events occur at the same time ...
Alejandro G. Di Rienzo
wiley   +1 more source

Better VAT for Both Explicit and Implicit Financial Fees

Public Budgeting &Finance, EarlyView.
Abstract Recently, several countries have initiated reforms on their VAT regimes to include financial services, following the emergence of various methods for taxing both implicit and explicit fees. This article provides a theoretical and empirical analysis of these reforms.
Guillermo Peña
wiley   +1 more source

Better quality score compression through sequence-based quality smoothing

BMC Bioinformatics, 2019
Motivation Current NGS techniques are becoming exponentially cheaper. As a result, there is an exponential growth of genomic data unfortunately not followed by an exponential growth of storage, leading to the necessity of compression. Most of the entropy
Yoshihiro Shibuya, Matteo Comin
doaj   +1 more source