Results 61 to 70 of about 37,020 (188)

Skip the alignment: degenerate, multiplex primer and probe design using K-mer matching instead of alignments. [PDF]

PLoS ONE, 2012
PriMux is a new software package for selecting multiplex compatible, degenerate primers and probes to detect diverse targets such as viruses. It requires no multiple sequence alignment, instead applying k-mer algorithms, hence it scales well for large ...
David A Hysom, Pejman Naraghi-Arani, Maher Elsheikh, A Celena Carrillo, Peter L Williams, Shea N Gardner   +5 more
doaj   +1 more source

A representation of a compressed de Bruijn graph for pan-genome analysis that enables search [PDF]

, 2016
Recently, Marcus et al. (Bioinformatics 2014) proposed to use a compressed de Bruijn graph to describe the relationship between the genomes of many individuals/strains of the same or closely related species.
Beller, Timo, Ohlebusch, Enno
core   +2 more sources

Distributed enhanced suffix arrays [PDF]

Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, 2019
Suffix arrays and trees are important and fundamental string data structures which lie at the foundation of many string algorithms, with important applications in computational biology, text processing, and information retrieval. Recent work enables the efficient parallel construction of suffix arrays and trees requiring at most O(n/p) memory per ...
Patrick Flick, Srinivas Aluru
openaire   +1 more source

Advancing Sclerotinia risk forecasting for winter rapeseed in Germany: integrating crop phenology and disease development into a decision support system

Pest Management Science, EarlyView.
Integrating crop phenology and sclerotia germination models into SkleroPro improved Sclerotinia risk prediction accuracy from 34% to 66%, optimizing fungicide timing and supporting sustainable winter rapeseed production. Abstract BACKGROUND Sclerotinia stem rot, caused by Sclerotinia sclerotiorum, threatens winter rapeseed (Brassica napus) production ...
Vera Krause, Nazanin Zamani‐Noor, Lena Müller, Hella Kehlenbeck, Anto Raja Dominic   +4 more
wiley   +1 more source

Approximate String Matching with Compressed Indexes

Algorithms, 2009
A compressed full-text self-index for a text T is a data structure requiring reduced space and able to search for patterns P in T. It can also reproduce any substring of T, thus actually replacing T. Despite the recent explosion of interest on compressed
Pedro Morales, Arlindo L. Oliveira, Luís M. S. Russo, Gonzalo Navarro   +3 more
doaj   +1 more source

A Fast Algorithm for the Largest Area First Parsing of Real Strings

IEEE Access, 2020
The largest area first parsing of a string often leads to the best results in grammar compression for a variety of input data. However, the fastest existing algorithm has Θ(N2 log N) time complexity, which makes it impractical for real-life ...
Ivan Katanic, Strahil Ristov, Martin Rosenzweig   +2 more
doaj   +1 more source

Simple Algorithm to Maintain Dynamic Suffix Array for Text Indexes [PDF]

, 2011
Dynamic suffix array is a suffix data structure that reflects various patterns in a mutable string. Dynamic suffix array is rather convenient for performing substring search queries over database indexes that are frequently modified.
Ajtkulov, P., Urbanovich, D.
core  

Flexural performance of concrete‐filled steel tubular beams with wood chip aggregate

Structural Concrete, EarlyView.
Abstract This study investigates the flexural performance of concrete‐filled steel tubular (CFST) beams with partial replacement of aggregates by wood chips (0%–25%) through experimental and numerical analysis. This study is novel in that it experimentally and numerically investigates the flexural behavior of CFST beams with partial replacement of ...
Mizan Ahmed, Mohamed Emara, Vipulkumar Ishvarbhai Patel, Wensu Chen, Xihong Zhang, Faiz Shaikh, Ahmed Hamoda   +6 more
wiley   +1 more source

Getting close-ish: A corpus based exploration of -ish as a marker of approximation and vagueness

Zeitschrift für Wortbildung, 2023
This paper investigates the approximative nature of -ish, which takes its origin in de-adjectival adjectives in Middle English and from there spreads to -ish-derivatives from a wide array of bases, in terms of both categoriality and complexity.
Matthias Eitelmann, Dagmar Haumann
doaj   +1 more source

Integrated Methylome–Transcriptome Analysis Reveals Epigenomic Remodeling and Rho GTPase–Linked Immune–Epithelial Crosstalk in Atopic Dermatitis

Allergy, EarlyView.
Integrated methylome–transcriptome–microbiome analysis of AD skin identified thousands of DMRs. Rho GTPase signaling and actin–junctional programs emerged as central hubs integrating immune, epithelial, and microbial interactions in the pathogenesis of atopic dermatitis.
Tiina Skoog, Ying Yang, Peter Olah, Shintaro Katayama, Piia Karisola, Catherine Smith, Stephan Weidinger, Jonathan Barker, Antti Lauerma, Björn Andersson, Bernhard Homey, Nanna Fyhrquist, Juha Kere, Harri Alenius, MAARS Consortium, Francesca Levi‐Schaffer, Dario Greco, Stefanie Prast‐Nielsen, Vassili Soumelis, Sophia Tsoka, Jens M. Schröder, Frank O. Nestle, Philippe Hupé   +22 more
wiley   +1 more source