Results 51 to 60 of about 7,203 (204)

Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding [PDF]

, 2016
We report here the ~670 Mb genome assembly of the Asian seabass (Lates calcarifer), a tropical marine teleost. We used long-read sequencing augmented by transcriptomics, optical and genetic mapping along with shared synteny from closely related fish ...
A Bairoch, A Christoffels, A Gurevich, A Kozomara, A McKenna, A Mitchell, A Morgulis, A Morgulis, A Pradhan, A Reiner, A Rodriguez-Mari, A Stamatakis, A Yates, AI Makunin, AJ Enright, AL Price, AL Price, Alan Christoffels, Aleksey Komissarov, Alexey Tupikin, Amy Hin Yan Tong, Andrey A. Yurchenko, AR Quinlan, B Langmead, B Star, C Berthelot, C Camacho, C Holt, C Wang, Chen-Shan Chin, CS Chin, D Brawand, D Ellinghaus, DA Benson, Darrell Green, DC Hardie, Dean R. Jerry, DH Alexander, Doreen Lau, DR Kelley, DRS-K, C. Jerry, E Casacuberta, E. TG Staristina, EW Myers, F Abascal, F Chen, F Yang, FC Jones, FJ Krsticevic, Fritz J. Sedlazeck, G Abrusan, G Benson, G Lin, G Marcais, G Parra, G Parra, G Tamazian, GH Yue, GH Yue, Gopikrishna Gopalapillai, Gregory W. Vurture, GS Slater, GT Valente, H Li, H Saiga, Heiner Kuhl, HH Kazazian Jr., I Braasch, Inna S. Kuznetsova, IS Kuznetsova, J Castresana, J Eid, J Huerta-Cepas, J Jurka, J Lin, James P. Drake, JG Ruby, JN Volff, JN Volff, Jolly M. Saju, Jonas Korlach, JS Chew, Junhui Jiang, K Howe, K Katoh, K Prufer, Kathiresan Purushothaman, KD Pruitt, KJ Hoff, KP Koepfli, KW Tzung, Lawrence S. Hon, László Orbán, M Blanchette, M Kanehisa, M Kasahara, M Kolmogorov, M Krzywinski, M Martin, M Schartl, M Tarailoâ-Graovac, M Tine, MA Larkin, Mario Jonas, Marsel Kabilov, Matthew Boitano, MB Stocks, MG Grabherr, Michael C. Schatz, MJ Chaisson, MR Friedlander, N Siegel, Natascha M. Thevasagayam, NM Thevasagayam, O Jaillon, O Otero, P Cingolani, P Ravi, P Schattner, P Shannon, P Xu, Paul M. Richardson, PE Warburton, Peter Van Heusden, R Kajitani, R Lorenz, R Luo, R Moore, R Pethiyagoda, R Poulter, R She, R Sreenivasan, Ramkumar Lachumanan, RD Ward, RD Ward, Richard Hall, RJ Roberts, S Chen, S Guindon, S Hoegg, S Hoegg, S Koren, S Vij, S Zhou, Sai Rama Sridatta Prakki, Sarah Mwangi, SF Altschul, Shubha Vij, Si Lok, Si Yan Ngoh, Siddharth Singh, Simon Moxon, SM Kielbasa, Sridhar Sivasubbu, Stanley Kimbung Mbandi, Stephen J. O'Brien, Stephen W. Turner, T Anantharaman, Tamás Dalmay, Tansyn H. Noble, TD Wu, TF DeLuca, TH O'Hare, TLO Davis, TS Anantharaman, Tyler Garvin, U Consortium, U Grimholt, V Douard, V Ravi, Vinaya Kumar Katneni, Vinod Scaria, Vladimir Trifonov, W Xue, WC Liew, Woei Chang Liew, WS Davidson, X Huang, X Zheng, XG Wang, XG Wang, Xueyan Shen, Y Guiguen, Y Han, Y Hashiguchi, Y Moriya, Y Sato, Y Sato, Y Sato, Z Lai, Ø Hammer   +190 more
core   +5 more sources

Vibrio anguillarum infection in tiger puffer (Takifugu rubripes) firgerlings.

Fish Pathology, 1987
種苗生産過程のトラフグ(Takifugu rubripes)稚魚(全長10～15mm)に大量斃死を伴う細菌感染症が発生し, 原因菌として Vibrio anguillarum が分離された。分離された V.anguillarum に対する感染症をトラフグ稚魚が有することは筋肉内接種により確認されたが, 菌液浸漬法では発病せず, その感受性は比較的低いものと考えられた。
Kiyokuni MUROGA, Varin TANASOMWANG, Kazuo MOMOYAMA   +2 more
openaire   +2 more sources

The Sex-Determining Locus in the Tiger Pufferfish,Takifugu rubripes [PDF]

Genetics, 2007
AbstractThe tiger pufferfish (fugu), Takifugu rubripes, is a model fish that has had its genome entirely sequenced. By performing genomewide linkage analyses, we show that the sex of fugu is determined by a single chromosomal region on linkage group 19 in an XX–XY system.
Kiyoshi, Kikuchi, Wataru, Kai, Ayumi, Hosokawa, Naoki, Mizuno, Hiroaki, Suetake, Kiyoshi, Asahina, Yuzuru, Suzuki   +6 more
openaire   +2 more sources

Application of transcriptome analysis to investigate the effects of long-term low temperature stress on liver function in the tiger puffer (Takifugu rubripes)

Frontiers in Marine Science, 2022
The tiger puffer (Takifugu rubripes) is an important economic fish species in northern China. However, it is a warm-temperature species, and low winter temperatures can result in high mortality in aquaculture.
Zhifeng Liu, Zhifeng Liu, Liguang Zhu, Liguang Zhu, Liguang Zhu, Xinan Wang, Xinan Wang, Shiying Liu, Shiying Liu, Aijun Ma, Aijun Ma, Haowen Chang, Haowen Chang, Haowen Chang, Zhibin Sun, Zhibin Sun, Fei Xu, Fei Xu, Haichi Zhao, Haichi Zhao, Haichi Zhao   +20 more
doaj   +1 more source

A novel tilapia prolactin receptor is functionally distinct from its paralog [PDF]

, 2009
A novel tilapia prolactin (PRL) receptor (OmPRLR2) was identified based on its induction during hyperosmotic stress. OmPRLR2 protein shows 28% identity to tilapia OmPRLR1 and 26% identity to human PRLR.
Fiol, Diego Fernando, Kultz, Dietmar, Sacchi, Romina, Sanmarti, Enio   +3 more
core   +2 more sources

High Diversity of Long Terminal Repeat Retrotransposons in Compact Vertebrate Genomes: Insights from Genomes of Tetraodontiformes

Animals
This study aimed to investigate the evolutionary profile (including diversity, activity, and abundance) of retrotransposons (RTNs) with long terminal repeats (LTRs) in ten species of Tetraodontiformes.
Bingqing Wang, Ahmed A. Saleh, Naisu Yang, Emmanuel Asare, Hong Chen, Quan Wang, Cai Chen, Chengyi Song, Bo Gao   +8 more
doaj   +1 more source

Toxicity of the Puffer Fish Takifugu porphyreus and Takifugu rubripes from Coastal Areas of Korea [PDF]

Korean Journal of Fisheries and Aquatic Sciences, 2006
Toxicity of two species of puffer fish, Takifugu porphyreus and Takifugu rubripes, collected from coastal regions of Korea, was determined using a mouse bioassay, In T. porphyreus, the proportion of toxic specimens containing 10 MU/g was 58.3% for the ovary, 32.6% for the skin, 12.0% for the gallbladder, 11.6% for the liver and intestine, and 9.3% for ...
Ji-Hoe Kim, Kwang-Tae Son, Jong-Soo Mok, Eun-Gyoung Oh, Joo-Kyung Kim, Tae-Seek Lee   +5 more
openaire   +1 more source

A Genetic Linkage Map for the Tiger Pufferfish,Takifugu rubripes [PDF]

Genetics, 2005
AbstractThe compact genome of the tiger pufferfish, Takifugu rubripes (fugu), has been sequenced to the “draft” level and annotated to identify all the genes. However, the assembly of the draft genome sequence is highly fragmented due to the lack of a genetic or a physical map.
Wataru, Kai, Kiyoshi, Kikuchi, Masashi, Fujita, Hiroaki, Suetake, Atushi, Fujiwara, Yasutoshi, Yoshiura, Mitsuru, Ototake, Byrappa, Venkatesh, Kadoo, Miyaki, Yuzuru, Suzuki   +9 more
openaire   +2 more sources

QuickProt: A Fast and Accurate Homology‐Based Protein Annotation Tool for Non‐Model Organisms to Advance Comparative Genomics

Molecular Ecology Resources, Volume 26, Issue 2, February 2026.
ABSTRACT The rapid growth of genome sequencing has outpaced the development of efficient annotation tools, especially for species lacking transcriptome data. To address this challenge, we present QuickProt, a fast, accurate and user‐friendly homology‐based protein annotation tool.
Guisen Chen, Hehe Du, Zhenjie Cao, Ying Wu, Chen Zhang, Yongcan Zhou, Jingqun Ao, Yun Sun, Zihao Yuan   +8 more
wiley   +1 more source

Genetic variations suggests that Takifugu rubripes, T. chinensis, and T. pseudommus are the same species with a shared gene pool

Frontiers in Marine Science
IntroductionPufferfish are valuable ingredients and important fishery resources in Asia. Among them, approximately 25 Takifugu species have undergone explosive speciation in the marine environments of East Asia. Specifically, T. rubripes, T.
Ji Young Lee, Kun Hee Kim, Hyuk Je Lee, Sun-Goo Hwang, Tae Sun Kang   +4 more
doaj   +1 more source