Results 81 to 90 of about 144,717 (245)
Structural insights into an engineered feruloyl esterase with improved MHET degrading properties
FEBS Letters, EarlyView.A feruloyl esterase was engineered to mimic key features of MHETase, enhancing the degradation of PET oligomers. Structural and computational analysis reveal how a point mutation stabilizes the active site and reshapes the binding cleft, expading substrate scope.
Panagiota Karampa +5 more
wiley +1 more source
, 2020 This paper presents a new topic modelling framework inspired by game theoretic principles. It is formulated as a normal form game in which words are represented as players and topics as strategies that the players select. The strategies of each player are modelled with a probability distribution guided by a utility function that the players try to ...
openaire +3 more sources
FEBS Letters, EarlyView.Biomolecular condensates formed by fused in sarcoma (FUS) are dissolved by high ATP concentrations yet persist in cells. Using a reconstituted system, we demonstrate that valosin‐containing protein (VCP), an AAA+ ATPase, counteracts ATP‐driven dissolution of FUS condensates through its D2 ATPase activity.
Hitomi Kimura +2 more
wiley +1 more source
ConTopic: Human-in-the-loop neural topic modeling with constraint loss for topic quality improvement
Visual InformaticsExisting neural topic models often produce semantically ambiguous or low-quality topics, limiting their effectiveness in real-world applications. To address this, we propose ConTopic, a human-in-the-loop framework that integrates user-defined “must-link”
Qiuchen Fan, Yue Shen, Jie Li
doaj +1 more source
Diversity and complexity in neural organoids
FEBS Letters, EarlyView.Neural organoid research aims to expand genetic diversity on one side and increase tissue complexity on the other. Chimeroids integrate multiple donor genomes within single organoids. Self‐organising multi‐identity organoids, exogenous cell seeding, or enforced assembly of region‐specific organoids contribute to tissue complexity.
Ilaria Chiaradia, Madeline A. Lancaster
wiley +1 more source
Hyperosmotic stress induces PARP1‐mediated HPF1‐dependent mono(ADP‐ribosyl)ation
FEBS Letters, EarlyView.Sorbitol‐induced hyperosmotic stress rapidly induces reversible mono(ADP‐ribosyl)ation (MARylation) on PARP1 without the signs of genotoxic signaling. We show that PARP1 autoMARylation is HPF1 dependent and forms hydroxylamine‐resistant O‐glycosidic linkages.
Anna Georgina Kopasz +11 more
wiley +1 more source
Automatic Seed Word Selection for Topic Modeling
IEEE AccessTopic modeling is widely used to uncover latent semantic topics from a corpus. However, topic models often struggle to identify minor topics due to their tendency to prioritize dominant patterns in the data. They are also hindered by polysemous words and
Dahyun Jeong +3 more
doaj +1 more source
FEBS Letters, EarlyView.Mitochondrial remodeling shapes neural and glial lineage progression by matching metabolic supply with demand. Elevated OXPHOS supports differentiation and myelin formation, while myelin compaction lowers mitochondrial dependence, revealing mitochondria as key drivers of developmental energy adaptation.
Sahitya Ranjan Biswas +3 more
wiley +1 more source
Research Community Mining via Generalized Topic Modeling [PDF]
Mehran University Research Journal of Engineering and Technology, 2012 Mining research community on the basis of hidden relationships present between its entities is important from academic recommendation point of view. Previous approaches discovered research community by using network connectivity based distance measures
Ali Daud +2 more
doaj
The ubiquitin ligase RNF115 is required for the clearance of damaged lysosomes
FEBS Letters, EarlyView.Upon lysosomal rupture, an E3 ubiquitin ligase RNF115 translocates from the cytosol to the damaged lysosomal membrane. Moreover, RNF115 depletion impairs the clearance of damaged lysosomes, identifying it as a key regulator of lysosomal quality control.
Sae Nakanaga +3 more
wiley +1 more source