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Genome Biology, 2017 The genome-wide investigation of DNA methylation levels has been limited to reference transposable element positions. The methylation analysis of non-reference and mobile transposable elements has only recently been performed, but required both genome ...
Josquin Daron, R. Keith Slotkin
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BMC Bioinformatics, 2022 Background Detection of newly transposed events by transposable elements (TEs) from next generation sequence (NGS) data is difficult, due to their multiple distribution sites over the genome containing older TEs.
Akio Miyao, Utako Yamanouchi
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Transposable elements inDrosophila [PDF]
Mobile Genetic Elements, 2017 Transposable elements (TEs) are mobile genetic elements that can mobilize within host genomes. As TEs comprise more than 40% of the human genome and are linked to numerous diseases, understanding their mechanisms of mobilization and regulation is important. Drosophila melanogaster is an ideal model organism for the study of eukaryotic TEs as its genome
Tabitha J McCullers, Mindy Steiniger
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Transposable Element Mobilization in Interspecific Yeast Hybrids
bioRxiv, 2020 Barbara McClintock first hypothesized that interspecific hybridization could provide a “genomic shock” that leads to the mobilization of transposable elements.
C. Heil +4 more
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Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda. [PDF]
PLoS ONE, 2011 Repeat-associated small interfering RNAs (rasiRNAs) are derived from various genomic repetitive elements and ensure genomic stability by silencing endogenous transposable elements. Here we describe a novel subset of 46 rasiRNAs named LNCR rasiRNAs due to
Slavica Stanojcic +6 more
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Transposable elements in yeasts
C R Biol., 2011 With the development of new sequencing technologies in the past decade, yeast genomes have been extensively sequenced and their structures investigated. Transposable elements (TEs) are ubiquitous in eukaryotes and constitute a limited part of yeast genomes. However, due to their ability to move in genomes and generate dispersed repeated sequences, they
Cécile Neuvéglise +2 more
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Evolutionary genomics of transposable elements in Saccharomyces cerevisiae [PDF]
Carr M, Bensasson D, Bergman CM (2012) Evolutionary Genomics of
Transposable Elements in Saccharomyces cerevisiae. PLoS ONE 7(11): e50978, 2012 Saccharomyces cerevisiae is one of the premier model systems for studying the genomics and evolution of transposable elements. The availability of the S. cerevisiae genome led to many insights into its five known transposable element families (Ty1-Ty5) in the years shortly after its completion.
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Modulating signaling networks by CRISPR/Cas9-mediated transposable element insertion [PDF]
, 2018 In a recent past, transposable elements (TEs) were referred to as selfish genetic components only capable of copying themselves with the aim of increasing the odds of being inherited.
A Bolotin +76 more
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Characterization of Botrytis cinerea isolates from small fruits and grapevine in Serbia [PDF]
Archives of Biological Sciences, 2009 Twenty-six single-spore isolates of Botrytis cinerea from blackberry, raspberry, strawberry, and grapevine were investigated using transposable elements, morphological characterization, and sensitivity to fungicides.
Tanović Brankica +3 more
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Comparative analysis of repeat content in plant genomes, large and small
Frontiers in Plant Science, 2023 The DNA Features pipeline is the analysis pipeline at EMBL-EBI that annotates repeat elements, including transposable elements. With Ensembl’s goal to stay at the cutting edge of genome annotation, we proved that this pipeline needed an update.
Joris Argentin +4 more
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