Results 61 to 70 of about 1,813,007 (299)

Single‐cell DNA methylation profiling: Technologies, computation, and applications in precision oncology

open access: yesMolecular Oncology, EarlyView.
Single‐cell DNA methylation (scDNAme) profiling maps epimutational clonal evolution, revealing mechanisms of malignancy and therapeutic resistance across diverse cancer types. By providing a high‐resolution landscape of intratumoral heterogeneity, these technologies empower precise patient stratification, guide the development of enhanced ...
Ik Soo Kim
wiley   +1 more source

Due to Rare Transposable Element Insertion Alleles of Large Effect [PDF]

open access: yes, 2014
Transposable elements are a common source of genetic variation that may play a substantial role in contributing to gene expression variation. However, the contribution of transposable elements to expression variation thus far consists of a handful of ...
Long, Anthony D   +5 more
core   +1 more source

Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome

open access: yesMobile DNA, 2019
Background Transposable elements make up a significant portion of the human genome. Accurately locating these mobile DNAs is vital to understand their role as a source of structural variation and somatic mutation. To this end, laboratories have developed
Jared P. Steranka   +12 more
doaj   +1 more source

Transcriptome analyses reveal tau isoform-driven changes in transposable element and gene expression.

open access: yesPLoS ONE, 2021
Alternative splicing of the gene MAPT produces several isoforms of tau protein. Overexpression of these isoforms is characteristic of tauopathies, which are currently untreatable neurodegenerative diseases.
Jennifer Grundman   +3 more
doaj   +1 more source

Homotypic Transposable Element Pairing May Drive Coherent Chromatin Folding. [PDF]

open access: yesGenes (Basel)
Background/Objectives: Transposable elements comprise over 50% of the human genome, yet their role in chromatin organization is insufficiently studied. This study was motivated by the hypothesis that transposable elements drive chromatin contacts through
Myakishev-Rempel M.
europepmc   +2 more sources

Spatial biology in cancer epigenetics

open access: yesMolecular Oncology, EarlyView.
Spatial epigenomics combines molecular profiling with tissue architecture to reveal how gene regulation is organized within intact tissues. In cancer, these technologies uncover the mechanisms driving tumor heterogeneity and microenvironmental interactions, opening new opportunities for biomarker discovery and precision medicine.
Eva Crespo‐García, Manel Esteller
wiley   +1 more source

The effects of foreign genes in transgenic Thale cress (Arabidopsis thaliana [PDF]

open access: yes, 1991
Agrobacterium tumefaciens-mediated transformation was used to introduce foreign genes into Arabidopsis thaliana (Thale Cress). Initially a simple marker gene construct (pJIT73) was used to set up the transformation system. Once established, three further
Evans, Katherine Mary, Evans, K.M
core  

Transposable element-medicated evolution of sex: a population genetic model [PDF]

open access: yes, 1990
For a population made up of individuals capable of sexual as well as asexual modes of reproduction, conditions for the spread of a transposable element are explored using a one-locus, two-haplotype model.
Joshi, N. V.
core   +2 more sources

Architectural and evolutionary features of TE-derived TSSs shape tissue-specific promoter activity in the human genome

open access: yesNature Communications
Transposable elements are abundant in the human genome and have been increasingly recognized as sources of alternative promoters. Yet, the extent of their transcriptional activity in human tissues and the features that govern their regulatory potential ...
Ya Zhang   +3 more
doaj   +1 more source

Intrapatient tumour heterogeneity and clonal evolution in an autopsy study of metastatic salivary gland cancer

open access: yesMolecular Oncology, EarlyView.
Tumour heterogeneity and clonal evolution of metastatic salivary gland cancer were evaluated in two patients with adenoid carcinoma and one patient with myoepithelial carcinoma. Radiology‐guided autopsy enabled multi‐region sampling (total samples n = 149), followed by whole‐genome sequencing and phylogenetic reconstruction (17 tumour samples, 4–7 per ...
Gerben Lassche   +10 more
wiley   +1 more source

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