Results 91 to 100 of about 686,759 (258)

common-workflow-language/cwltool 1.0.20170928192020

, 2017
Common Workflow Language reference ...
Thomas Hickman, John Kern, Kapil kumar, Brad Chapman, Abram Connelly, psaffrey-illumina, Tomoya Tanjo, Denis Yuen, Janneke van der Zwaan, Andrey Kartashov, Gijs Molenaar, Manvendra Singh, Guillermo Carrasco, Alejandro Barrera, Michael Kotliar, Ward Vandewege, Dan Leehr, Stian Soiland-Reyes, Hervé Ménager, John Bradley, Sinisa Ivkovic, John Chilton, Michael R. Crusoe, boysha, Peter Amstutz, Joshua C. Randall, Nebojsa Tijanic, Pau Ruiz Safont, Ryan Spangler, Jiayong Li, James J Porter, Radhika Chippada   +31 more
core   +1 more source

Profiling neoadjuvant therapy response in rectal cancer using meta‐analysis of publicly available transcriptomic RNA‐seq datasets

Molecular Oncology, EarlyView.
This study integrates publicly available transcriptomic datasets to identify molecular signatures associated with response to neoadjuvant chemoradiotherapy in locally advanced rectal cancer. By analyzing a combination of multiple cohorts with bioinformatics approaches, we reveal biological pathways and immune‐related features that may improve ...
Aleksandra Stanojevic, Rafael Stroggilos, Mladen Marinkovic, Ana Djuric, Suzana Stojanovic‐Rundic, Radmila Jankovic, Sergi Castellvi‐Bel, Remond J.A. Fijneman, Antonia Vlahou, Jerome Zoidakis, Milena Cavic   +10 more
wiley   +1 more source

MegaSyn: Integrating Generative Molecular Design, Automated Analog Designer, and Synthetic Viability Prediction

ACS Omega, 2022
Fabio Urbina, Christopher T. Lowden, J. Christopher Culberson, Sean Ekins   +3 more
doaj   +1 more source

Sistemas de workflow XML: análise e proposta de um modelo para Uni-CV [PDF]

, 2010
Mestrado em Engenharia Electrónica e TelecomunicaçõesEste trabalho visa apresentar um estudo sobre sistemas de workflow em que destacámos as suas vantagens, inconveniências, dificuldades na aceitação e utilização.
Barros, Celestino Lopes de
core  

Extracellular vesicle lipidomics liquid biopsy reveals systemic and tumor microenvironment metabolic reprogramming in ovarian cancer

Molecular Oncology, EarlyView.
Extracellular vesicle (EV) lipidomic profiling of plasma and ascites from patients with high‐grade serous ovarian cancer and of ovarian cancer cell lines reveals enrichment of triglycerides (TGs), diacylglycerols (DGs), phosphatidylcholine (PCs), sphingomyelins (SMs), reflecting tumor metabolic reprogramming.
Shikha Rani, Dominic Guanzon, Andrew Lai, Katherin Scholz‐Romero, Sarah Reed, Edita Ritmejeryte, Rohan Lourie, Naven Chetty, Kaltin Ferguson, Carlos Salomon   +9 more
wiley   +1 more source

common-workflow-language/cwltool: 3.1.20220124184855

, 2022
What's Changed "when" expressions get an empty "self" variable by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1601 single-process: handle step-level req collisions by @mr-c in https://github.com/common-workflow-language/cwltool ...
Thomas Hickman, Kapil kumar, Brad Chapman, Miguel Boland, Farah Zaib Khan, Tomoya Tanjo, Denis Yuen, Rupert Nash, Andrey Kartashov, Gijs Molenaar, Manvendra Singh, Guillermo Carrasco, Alejandro Barrera, bogdang989, Michael Kotliar, Dan Leehr, Stian Soiland-Reyes, Hervé Ménager, John Chilton, Michael R. Crusoe, boysha, ash, Peter Amstutz, Nebojsa Tijanic, Joshua C. Randall, Pau Ruiz Safont, Giacomo Tagliabue, Chuck McCallum, James J Porter   +28 more
core   +1 more source

A role for eIF5A in translational control of stress‐inducible proteins in multiple myeloma cell lines

Molecular Oncology, EarlyView.
Loss of eIF5A rewires thapsigargin‐mediated endoplasmic reticulum stress responses in multiple myeloma cells by selective translation of mRNA transcripts, consequently dampening thapsigargin‐induced unfolded protein response (UPR) activation and shifting the balance from induction of apoptosis toward cell survival and proliferation.
Demi Both, Ingrid A. M. Derks, Raphaël Vanleyssem, Marine Leclercq, Najla El Hachem, Pierre Close, Eric Eldering, Marco Vincent Haselager   +7 more
wiley   +1 more source

A Hybrid Semi-Automated Workflow for Systematic and Literature Review Processes with Large Language Model Analysis

Future Internet
Systematic reviews (SRs) are a rigorous method for synthesizing empirical evidence to answer specific research questions. However, they are labor-intensive because of their collaborative nature, strict protocols, and typically large number of documents ...
Anjia Ye, Ananda Maiti, Matthew Schmidt, Scott J. Pedersen   +3 more
doaj   +1 more source

Bioinformatic Workflows for Generating Complete Plastid Genome Sequences—An Example from Cabomba (Cabombaceae) in the Context of the Phylogenomic Analysis of the Water-Lily Clade

Life, 2018
The sequencing and comparison of plastid genomes are becoming a standard method in plant genomics, and many researchers are using this approach to infer plant phylogenetic relationships.
Michael Gruenstaeudl, Nico Gerschler, Thomas Borsch   +2 more
doaj   +1 more source

APOBEC3 activity and DNA polymerase‐ε deficiency are associated with distinct IDH1 R132 hotspot mutations

Molecular Oncology, EarlyView.
Isocitrate dehydrogenase 1 (IDH1) mutations are highly recurrent in multiple human cancer types, including cholangiocarcinoma and glioma. IDH1 R132C is the most common IDH1 mutation in cholangiocarcinoma and likely arises from APOBEC3A‐ or APOBEC3B‐mediated deamination.
Kelly E. Butler, Bilal A. Lone, Ecem Unal, A. Rouf Banday   +3 more
wiley   +1 more source