Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins. [PDF]
MicrobiomeXiong Y +4 more
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Expanding the Eco-collection of Methane-oxidizing Bacteria Inhabiting Rice Roots: Cultivation, Isolation, and Genomic Characterization of Isolates. [PDF]
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria. [PDF]
FEMS Microbiol EcolPerry EK +5 more
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Anaerobic methane oxidation coupled with denitrification mitigates soil nitrous oxide emissions. [PDF]
Sci AdvLi R, Yuan Y, Xi B, Tan W.
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Functionality of the xoxF gene in Methylobacterium dichloromethanicum DM4
Microbiology, 2015Activation of expression of the xoxFgene encoding PQQ-dependent methanol/ethanol dehydrogenase (METDI2492) in dichloromethane- (DCM) -grown Methylobacterium dichloromethanicum DM4 was first demonstrated. The sequence of the only XoxF homolog found in the genome of strain DM4 exhibited 50% identity to that of the protein (MxaF) of the large subunit of ...
Maria Torgonskaya +2 more
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XoxF Is Required for Expression of Methanol Dehydrogenase in Methylobacterium extorquens AM1 [PDF]
Journal of Bacteriology, 2011 ABSTRACT In Gram-negative methylotrophic bacteria, the first step in methylotrophic growth is the oxidation of methanol to formaldehyde in the periplasm by methanol dehydrogenase. In most organisms studied to date, this enzyme consists of the MxaF and MxaI proteins, which make up the large and small subunits of this ...
Elizabeth Skovran +2 more
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XoxF Acts as the Predominant Methanol Dehydrogenase in the Type I Methanotroph Methylomicrobium buryatense [PDF]
Journal of Bacteriology, 2016 ABSTRACT Many methylotrophic taxa harbor two distinct methanol dehydrogenase (MDH) systems for oxidizing methanol to formaldehyde: the well-studied calcium-dependent MxaFI type and the more recently discovered lanthanide-containing XoxF type.
Mary Lidström, Frances Chu
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XoxF-Type Methanol Dehydrogenase from the Anaerobic Methanotroph “Candidatus Methylomirabilis oxyfera” [PDF]
Applied and Environmental Microbiology, 2015 ABSTRACT “ Candidatus Methylomirabilis oxyfera” is a newly discovered anaerobic methanotroph that, surprisingly, oxidizes methane through an aerobic methane oxidation pathway. The second step in this aerobic pathway is the oxidation of methanol.
Hans Wessels +2 more
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Structure and function of the lanthanide-dependent methanol dehydrogenase XoxF from the methanotroph Methylomicrobium buryatense 5GB1C [PDF]
Journal of Biological Inorganic Chemistry, 2018 In methylotrophic bacteria, which use one-carbon (C1) compounds as a carbon source, methanol is oxidized by pyrroloquinoline quinone (PQQ)-dependent methanol dehydrogenase (MDH) enzymes. Methylotrophic genomes generally encode two distinct MDHs, MxaF and XoxF.
Amy Rosenzweig +2 more
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The impact of periplasmic localisation on the functioning of the XoxF protein was evaluated in the well-studied dichloromethane-utilising methylotroph Methylorubrum extorquens DM4, which harbors only one paralogue of the xoxF gene. It was found that the cytoplasmic targeting of XoxF by expression of the corresponding gene without the sequence encoding ...
Yulia Firsova +2 more
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