, 2001 The bacterial diversity assessed from clone libraries prepared from rRNA (two libraries) and ribosomal DNA (rDNA) (one library) from polychlorinated biphenyl (PCB)-polluted soil has been analyzed.
Amann, R. +5 more
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Use of RNA secondary structure for evolutionary relationships : investigating RNase P and RNase MRP : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Genetics at Massey University, New Zealand [PDF]
, 1998 Bioinformatics is applied here to examine whether RNA secondary structure data can reflect distant evolutionary relationships. This is important when there is little confidence in sequence data such as when looking at the evolution of RNase MRP (MRP ...
Collins, Lesley Joan
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Evidence of global-scale aeolian dispersal and endemism in isolated geothermal microbial communities of Antarctica [PDF]
, 2014 New evidence in aerobiology challenges the assumption that geographical isolation is an effective barrier to microbial transport. However, given the uncertainty with which aerobiological organisms are recruited into existing communities, the ultimate ...
Cary, S. Craig +3 more
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Application of COMPOCHIP Microarray to Investigate the Bacterial Communities of Different Composts [PDF]
, 2009 A microarray spotted with 369 different 16S rRNA gene probes specific to microorganisms involved in the degradation process of organic waste during composting was developed. The microarray was tested with pure cultures, and of the 30,258 individual probe-
A Alfreider +54 more
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Williamsia faeni sp. nov., an actinomycete isolated from a hay meadow [PDF]
, 2010 The taxonomic status of an actinomycete isolated from soil collected from a hay meadow was determined using a polyphasic approach. The strain, designated N1350T, had morphological and chemotaxonomic properties consistent with its classification in the ...
Goodfellow, Michael +2 more
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Time series genome-centric analysis unveils bacterial response to operational disturbance in activated sludge [PDF]
, 2019 Understanding ecosystem response to disturbances and identifying the most critical traits for the maintenance of ecosystem functioning are important goals for microbial community ecology.
Erijman, Leonardo +4 more
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PLoS ONE, 2013 16S ribosomal RNA currently represents the most important target of study in bacterial ecology. Its use for the description of bacterial diversity is, however, limited by the presence of variable copy numbers in bacterial genomes and sequence variation ...
Tomáš Větrovský, Petr Baldrian
doaj +1 more source
Polyphyly in 16S rRNA-based LVTree Versus Monophyly in Whole-genome-based CVTree
Genomics, Proteomics & Bioinformatics, 2018 We report an important but long-overlooked manifestation of low-resolution power of 16S rRNA sequence analysis at the species level, namely, in 16S rRNA-based phylogenetic trees polyphyletic placements of closely-related species are abundant compared to ...
Guanghong Zuo, Ji Qi, Bailin Hao
doaj +1 more source
Bacterial Community Reconstruction Using A Single Sequencing Reaction [PDF]
, 2010 Bacteria are the unseen majority on our planet, with millions of species and comprising most of the living protoplasm. While current methods enable in-depth study of a small number of communities, a simple tool for breadth studies of bacterial population
Amir, Amnon, Zuk, Or
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