Results 11 to 20 of about 417,138 (346)
Bacterial genotyping by 16S rRNA mass cataloging [PDF]
BMC Bioinformatics, 2006 Background It has recently been demonstrated that organism identifications can be recovered from mass spectra using various methods including base-specific fragmentation of nucleic acids.
Fox George E +3 more
doaj +4 more sources
Ants of French Guiana: 16S rRNA sequence dataset [PDF]
Biodiversity Data Journal, 2023 This dataset represents a reference library of DNA sequences for ants from French Guiana. A total of 3931 new sequences from the 16S rRNA gene has been generated. The reference library covers 344 species distributed in 57 genera.
Gaëtan Rongier +6 more
doaj +7 more sources
Dumpster diving for diatom plastid 16S rRNA genes [PDF]
PeerJ, 2021 High throughput sequencing is improving the efficiency of monitoring diatoms, which inhabit and support aquatic ecosystems across the globe. In this study, we explored the potential of a standard V4 515F-806RB primer pair in recovering diatom plastid 16S
Krista L. Bonfantine +4 more
doaj +5 more sources
How conserved are the conserved 16S-rRNA regions? [PDF]
PeerJ, 2017 The 16S rRNA gene has been used as master key for studying prokaryotic diversity in almost every environment. Despite the claim of several researchers to have the best universal primers, the reality is that no primer has been demonstrated to be truly ...
Marcel Martinez-Porchas +3 more
doaj +4 more sources
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes [PDF]
Applied and Environmental Microbiology, 2006 From near to far , from here to there , funny things are everywhere. —Dr. Seuss, One Fish Two Fish Red Fish Blue Fish In 1909, H. Joel Conn ([25][1]) expressed the hope that methods would soon be at hand by which the significance of the different bacteria present in any soil could ...
P. Janssen
semanticscholar +3 more sources
Phylogenetic Clustering of Soil Microbial Communities by 16S rRNA but Not 16S rRNA Genes [PDF]
Applied and Environmental Microbiology, 2012 ABSTRACT We evaluated phylogenetic clustering of bacterial and archaeal communities from redox-dynamic subtropical forest soils that were defined by 16S rRNA and rRNA gene sequences. We observed significant clustering for the RNA-based communities but not the DNA-based communities, as well as increasing clustering over time of the highly ...
Mary K. Firestone +2 more
openaire +3 more sources
A renaissance for the pioneering 16S rRNA gene [PDF]
Current Opinion in Microbiology, 2008 Culture-independent molecular surveys using the 16S rRNA gene have become a mainstay for characterizing microbial community structure over the past quarter century. More recently this approach has been overshadowed by metagenomics, which provides a global overview of a community's functional potential rather than just an inventory of its inhabitants ...
Tringe, SG, Hugenholtz, P
openaire +3 more sources
16S rRNA sequencing analysis: the devil is in the details [PDF]
Gut Microbes, 2020 User-friendly computational tools for 16S ribosomal RNA (rRNA) sequencing analysis enable researchers who are not bioinformaticians to analyze and interpret sequencing data from microbial communities. These tools' easy-to-use interfaces belie the sophisticated and rapidly-evolving science of their underlying algorithms.
Amy Tsou +7 more
openaire +4 more sources
Direct Analysis of Genes Encoding 16S rRNA from Complex Communities Reveals Many Novel Molecular Species within the Human Gut [PDF]
Applied and Environmental Microbiology, 1999 A. Suau +6 more
semanticscholar +2 more sources
RmtC 16S rRNA Methyltransferase in Australia [PDF]
Antimicrobial Agents and Chemotherapy, 2008 Proteus mirabilis isolate JIE273 was recovered in March 2007 from the urine of an inpatient at Blacktown Hospital, Sydney. In vitro susceptibility tests (Phoenix NMIC/ID-101 panel; BD, Franklin Lakes, NJ) indicated that JIE273 was susceptible to imipenem (MIC, ≤2 μg/ml), cefoxitin (MIC, ≤4 μg/
Sally R. Partridge +2 more
openaire +3 more sources