Results 161 to 170 of about 2,474,551 (357)

Refinement of amino‐acid conformation vs. difference density maps in time‐resolved serial femtosecond crystallography data analysis

FEBS Open Bio, EarlyView.
The dFoCC pipeline starts with observed DED and resting‐state coordinates, which are then used to generate a library of triggered states. Correlation analysis of the calculated DED features of each candidate vs observed DED permits quantitative evaluation of candidate structural quality.
Meng Iao Fong, Yuhei Hosokawa, Lars Oliver Essen, Manuel Maestre‐Reyna   +3 more
wiley   +1 more source

An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D

, 2009
Background: The phenotypic effects of sequence variations in protein-coding regions come about primarily via their effects on the resulting structures, for example by disrupting active sites or affecting structural stability.
Yeats, C, McMillan, LEM, Clegg, AB, Valencia, A, Izarzugaza, JMG, Baresic, A, Orengo, CA, Martin, ACR   +7 more
core  

Nucleotide and amino acid sequence comparisons.

, 2018
Nucleotide and amino acid sequence comparisons.
Benjamin Brennan (522804), Yan-Jang S. Huang (741918), Joseph Hughes (42279), Alain Kohl (252931), Ana Da Silva Filipe (3195999), Vattipally B. Sreenu (4517956), James I. Dunlop (4861777), Agnieszka M. Szemiel (305293), Richard M. Elliott (252934), Gavin S. Wilkie (694115), Lily Tong (5904683), Daniel Mair (5849150), Aitor Navarro (5904680), Dana L. Vanlandingham (200110), Sejal Modha (171848), Stephen Higgs (78539), Ping Li (31981)   +16 more
core   +1 more source

On the reliability and the limits of inference of amino acid sequence alignments. [PDF]

Bioinformatics, 2022
Rajapaksa S, Sumanaweera D, Lesk AM, Allison L, Stuckey PJ, Garcia de la Banda M, Abramson D, Konagurthu AS.   +7 more
europepmc   +1 more source

Sudden anaerobization in Amphibacillus xylanus increases intracellular labile ferrous iron and inhibits cell growth

FEBS Open Bio, EarlyView.
Abruptly changing from aerobic to anaerobic conditions (sudden anaerobization) induced growth inhibition and a significant increase in intracellular labile ferrous iron in the aerotolerant anaerobe Amphibacillus xylanus. We found that free flavins mediate efficient electron transfer from NADH to ferric iron under anaerobic conditions, suggesting that ...
Shinya Kimata, Yoichi Sakai, Keisuke Tanaka, Etsuro Yoshimura, Ken Kitano, Morio Ishikawa, Tadahiro Nakamoto, Tsutomu Takayama, Hirofumi Inoue, Kaho Nomura, Tomonori Suzuki, Masataka Uchino, Akira Abe, Youichi Niimura   +13 more
wiley   +1 more source

Molecular Cloning and Sequence Analysis of Aggretin, a Collagen-Like Platelet

, 2009
A cDNA library derived from the Malayan-pit-viper ( Calloselasma rhodostoma) venom gland was constructed in the phagemid vector. Using the information of the N-terminal amino acid sequences of two subunits of aggretin, synthetic mixed-base ...
鍾鏡湖;歐樂君;黃德富, CHUNG, CHING-HU;AU, LO-CHUN;HUANG, TUR -FU   +1 more
core  

Functional characterization of a cellulose binding xylanase from Fusarium oxysporum

, 1996
An extracellular endoxylanase from Fusarium oxysporum binds onto crystalline cellulose. A small peptide (~ 2kDa) could be isolated after partial proteolysis of the native protein.
Samyn, B, Nerinckx, W.,, Van Beeumen, J, Claeyssens, Marc, Nerinckx, W, Nerinckx, Wim, Maoris, B, Kekos, D, Christakopoulos, P, Van Beeumen, Jozef, Claeyssens, M.,, van Beeumen, J.,, Christakopoulos, Paul, Kekos, D.,, Samyn, B.,, Samyn, Bart, MACRIS, B, Claeyssens, M, Macris, B.,   +18 more
core   +1 more source

Prion protein amino acid sequence influences formation of authentic synthetic PrP^Sc. [PDF]

Sci Rep, 2023
Block AJ, York TC, Benedict R, Ma J, Bartz JC.   +4 more
europepmc   +1 more source

Time‐restricted feeding prior to Mycobacterium tuberculosis infection reduces tissue CD4+ T cells with limited impact on bacterial clearance

FEBS Open Bio, EarlyView.
Time‐restricted feeding (TRF) in mice increased liver fatty acid oxidation and decreased fatty acid biosynthesis. These alterations persisted when TRF was discontinued and the host was infected with Mycobacterium tuberculosis. Pre‐exposure to TRF did not alter tissue (lung and spleen) mycobacterial burden but significantly reduced CD3+ T cells in lungs
Ashish Gupta, Nidhi Yadav, Subhasmita Das, R. Rajendra Kumar Reddy, Nupur Sharma, Amol Ratnakar Suryawanshi, Jaswinder Singh Maras, Ranjan Kumar Nanda   +7 more
wiley   +1 more source

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Journal of the American Society for Mass Spectrometry, 1994
J. Eng, A. McCormack, J. Yates
semanticscholar   +1 more source