Results 21 to 30 of about 31,734 (247)
Stepwise Bayesian Phylogenetic Inference [PDF]
, 2020 Abstract The ideal approach to Bayesian phylogenetic inference is to estimate all parameters of interest jointly in a single hierarchical model. However, this is often not feasible in practice due to the high computational cost that would be incurred.
Sebastian Höhna, Allison Y. Hsiang
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Revista da Sociedade Brasileira de Medicina Tropical, 2022 Background: Malaria is a global health problem and is transmitted by the Anopheles species. Due to the epidemiological importance of the genus, studies on biological, phylogenetic, and evolutionary aspects have contributed to the understanding of ...
Valéria Silva Santos +2 more
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Generalizing Bayesian phylogenetics to infer shared evolutionary events [PDF]
Proceedings of the National Academy of Sciences, 2021 Abstract Many processes of biological diversification can simultaneously affect multiple evolutionary lineages. Examples include multiple members of a gene family diverging when a region of a chromosome is duplicated, multiple viral strains diverging at a “super-spreading” event, and a geological event fragmenting whole communities of ...
Jamie R. Oaks +3 more
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Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent. [PDF]
PLoS Genetics, 2016 The multispecies coalescent (MSC) is a statistical framework that models how gene genealogies grow within the branches of a species tree. The field of computational phylogenetics has witnessed an explosion in the development of methods for species tree ...
Dingqiao Wen, Yun Yu, Luay Nakhleh
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Quantifying the impact of an inference model in Bayesian phylogenetics [PDF]
Methods in Ecology and Evolution, 2019 Summary Phylogenetic trees are currently routinely reconstructed from an alignment of character sequences (usually nucleotide sequences). Bayesian tools, such as MrBayes, RevBayes and BEAST2, have gained much popularity over the last decade, as they allow joint estimation of
Bilderbeek, Richèl J.C. +2 more
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Using Bayesian Phylogenetics to Infer Manuscript Transmission History
Digital Scholarship in the Humanities, 2023 Abstract Bayesian phylogenetic methods offer various models that would be especially suitable in the reconstruction of textual traditions, but text-critical applications of phylogenetics to date have generally not taken advantage of these features. In this paper, we offer a way forward for text-critical phylogenetics.
Joey McCollum, Robert Turnbull
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Genetics and Molecular Biology, 2010 The phylogenetic placement of the monotypic crab plover Dromas ardeola (Aves, Charadriiformes) remains controversial. Phylogenetic analysis of anatomical and behavioral traits using phenetic and cladistic methods of tree inference have resulted in ...
Sergio L. Pereira, Allan J. Baker
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BMC Evolutionary Biology, 2005 Background Bayesian phylogenetic inference holds promise as an alternative to maximum likelihood, particularly for large molecular-sequence data sets.
Harlow Timothy J +2 more
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BMC Evolutionary Biology, 2010 Background Explicit evolutionary models are required in maximum-likelihood and Bayesian inference, the two methods that are overwhelmingly used in phylogenetic studies of DNA sequence data.
Luo Arong +7 more
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Mitochondrial DNA. Part B. Resources, 2022 The complete mitochondrial genome (mitogenome) of the Kyrghyz racerunner (Eremias nikoskii Bedriaga, 1905) from Kyrgyzstan was determined for the first time by next-generation sequencing.
Xianguang Guo +3 more
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