Results 31 to 40 of about 31,734 (247)
Mitochondrial DNA. Part B. Resources, 2022 In this study, we present the first representative complete Taphozous melanopogon mitochondrial genome from China. Its mitochondrial genome was assembled and annotated using MitoZ.
Yan-nan Li +3 more
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Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree [PDF]
Genetics, 2016 Abstract The distribution of a phenotype on a phylogenetic tree is often a quantity of interest. Many phenotypes have imperfect heritability, so that a measurement of the phenotype for an individual can be thought of as a single realisation from the phenotype distribution of that individual.
Ansari, MA, Didelot, X
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Improved Variational Bayesian Phylogenetic Inference using Mixtures
Trans. Mach. Learn. Res., 2023 We present VBPI-Mixtures, an algorithm designed to enhance the accuracy of phylogenetic posterior distributions, particularly for tree-topology and branch-length approximations. Despite the Variational Bayesian Phylogenetic Inference (VBPI), a leading-edge black-box variational inference (BBVI) framework, achieving remarkable approximations of these ...
Oskar Kviman +2 more
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Exact Bayesian inference for phylogenetic birth-death models [PDF]
Bioinformatics, 2018 Abstract Motivation Inferring the rates of change of a population from a reconstructed phylogeny of genetic sequences is a central problem in macro-evolutionary biology, epidemiology and many other disciplines. A popular solution involves estimating the parameters of a birth-death process (BDP), which
Kris V. Parag, Oliver G. Pybus
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The complete chloroplast genome sequence of Quercus ningangensis and its phylogenetic implication
Plant and Fungal Systematics, 2021 Quercus ningangensis is an economically and ecologically important tree species belonging to the family Fagaceae. In this study, the complete chloroplast (cp) genome of Q.
Tian-Rui Wang +3 more
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Bayesian inference of phylogenetic distances: revisiting the eigenvalue approach [PDF]
Bulletin of Mathematical BiologyAbstract Using genetic data to infer evolutionary distances between molecular sequence pairs based on a Markov substitution model is a common procedure in phylogenetics, in particular for selecting a good starting tree to improve upon.
Penn, MJ +4 more
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BMC Evolutionary Biology, 2018 Background Recent developments in sequencing technologies make it possible to obtain genome sequences from a large number of isolates in a very short time.
Sebastian Duchene +5 more
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Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
Peer Community Journal, 2023 A new generation of scalable single cell whole genome sequencing (scWGS) methods allows unprecedented high resolution measurement of the evolutionary dynamics of cancer cell populations.
Salehi, Sohrab +14 more
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Guided Tree Topology Proposals for Bayesian Phylogenetic Inference [PDF]
Systematic Biology, 2011 Increasingly, large data sets pose a challenge for computationally intensive phylogenetic methods such as Bayesian Markov chain Monte Carlo (MCMC). Here, we investigate the performance of common MCMC proposal distributions in terms of median and variance of run time to convergence on 11 data sets.
Sebastian, Höhna, Alexei J, Drummond
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Jurnal Ilmiah SINERGI, 2023 Dipterocarpaceae is one of the most prominent plant families, with more than 500 members of species. This family mostly used timber plants for housing, making ships, decking, and primary materials for making furniture. In Indonesia, many Dipterocarpaceae
Mirna Yunita +2 more
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