Results 41 to 50 of about 31,734 (247)
Sequential Bayesian Phylogenetic Inference
, 2023 Supplementary Material for the manuscript "Sequential Bayesian Phylogenetic Inference"
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Consistency of Bayesian inference of resolved phylogenetic trees [PDF]
Journal of Theoretical Biology, 2013 Bayesian inference is now a leading technique for reconstructing phylogenetic trees from aligned sequence data. In this short note, we formally show that the maximum posterior tree topology provides a statistically consistent estimate of a fully-resolved evolutionary tree under a wide variety of conditions.
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DM-PhyClus: a Bayesian phylogenetic algorithm for infectious disease transmission cluster inference
BMC Bioinformatics, 2018 Background Conventional phylogenetic clustering approaches rely on arbitrary cutpoints applied a posteriori to phylogenetic estimates. Although in practice, Bayesian and bootstrap-based clustering tend to lead to similar estimates, they often produce ...
Luc Villandré +4 more
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Bayesian Phylogenetic Inference from Animal Mitochondrial Genome Arrangements [PDF]
Journal of the Royal Statistical Society Series B: Statistical Methodology, 2002 SummaryThe determination of evolutionary relationships is a fundamental problem in evolutionary biology. Genome arrangement data are potentially more informative than deoxyribonucleic acid sequence data for inferring evolutionary relationships between distantly related taxa. We describe a Bayesian framework for phylogenetic inference from mitochondrial
Larget, Bret +2 more
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Bio-ProtocolBayesian phylogenetic analysis is essential for elucidating evolutionary relationships among organisms. Traditional methods often rely on fixed models and manual parameter settings, which can limit accuracy and efficiency.
Jinxing Wang +4 more
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Mitochondrial DNA. Part B. Resources, 2022 In this study, we aimed to determine the complete mitochondrial genome of blacktip shark Carcharhinus limbatus. The mitochondrial genome was 16,705 bp in length, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region ...
Xiaolin Huang +4 more
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Data in Brief, 2016 The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1].
Wei Wang +6 more
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Reconstructing enzyme evolution by protein engineering
FEBS Letters, EarlyView.Natural enzyme evolution can be retraced by protein engineering methods such as directed evolution, rational design, and ancestral sequence reconstruction. These approaches reveal how enzymes emerged from ligand‐binding scaffolds, developed varying substrate preferences, formed oligomeric complexes, adapted to environmental changes, and evolved novel ...
Lukas Drexler +2 more
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Prior Density Learning in Variational Bayesian Phylogenetic Parameters Inference
, 2023 Accepted as a full paper for publication at RECOMB-CG 2023 (LNBI proof version).
Amine M. Remita +2 more
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A short guide to phylogeny reconstruction
Plant, Soil and Environment, 2007 This review is a short introduction to phylogenetic analysis. Phylogenetic analysis allows comprehensive understanding of the origin and evolution of species.
E. Michu
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