Results 71 to 80 of about 31,734 (247)

A Bayesian Approach to Inferring the Phylogenetic Structure of Communities from Metagenomic Data [PDF]

Genetics, 2014
AbstractMetagenomics provides a powerful new tool set for investigating evolutionary interactions with the environment. However, an absence of model-based statistical methods means that researchers are often not able to make full use of this complex information.
O'Brien, J., Didelot, X., Iqbal, Z., Amenga-Etego, L., Ahiska, B., Falush, D. ; https://orcid.org/0000-0002-2956-0795   +5 more
openaire   +4 more sources

Phylogenomic insights into the genus Tulipa (Liliaceae): Taxonomy, evolution, and biogeography

American Journal of Botany, EarlyView.
Abstract Premise Tulips are one of the best‐known geophytes, but their taxonomy remains convoluted and their evolutionary history poorly understood. Here, we used plastid genomes to identify some issues with current classification, understand the diversification history of the genus, and identify potential species linked to historical cultivation ...
Brett Wilson, Maarten J. M. Christenhusz, Nathanael Walker‐Hale, Natalya Beshko, Mariyo Boboev, Colin Clubbe, Davron Dekhkonov, Aibek Dolotbakov, Mehmet Firat, Thomas Freeth, Sjaak de Groot, Avni Hajdari, Georgy A. Lazkov, Ormon Sultangaziev, Komiljon S. Tojibaev, Ben J. M. Zonneveld, Kaiyrkul T. Shalpykov, Samuel F. Brockington   +17 more
wiley   +1 more source

A Reversible Jump Method for Bayesian Phylogenetic Inference with a Nonhomogeneous Substitution Model [PDF]

Molecular Biology and Evolution, 2007
Nonhomogeneous substitution models have been introduced for phylogenetic inference when the substitution process is nonstationary, for example, when sequence composition differs between lineages. Existing models can have many parameters, and it is then difficult and computationally expensive to learn the parameters and to select the optimal model ...
Gowri-Shankar, Vivek, Rattray, Magnus; id_orcid 0000-0001-8196-5565   +1 more
openaire   +2 more sources

Integrating developmental and macroevolutionary approaches reveals a staminodial origin of all alternisepalous organs in Caryophyllaceae

American Journal of Botany, EarlyView.
Abstract Premise The identity of sterile floral organs in second‐whorl, alternisepalous positions within Caryophyllaceae remains contentious, having been described as staminodes, “petaloids,” or petals homologous with those of other Pentapetalae. Limited ingroup and outgroup sampling and floral developmental data and inadequate phylogenetic comparative
Riley J. Rees, Andrea D. Appleton, John J. Schenk   +2 more
wiley   +1 more source

Complete mitochondrial genome of the Grey thrush Turdus cardis (Aves, Turdidae)

Mitochondrial DNA. Part B. Resources, 2020
The mitogenome was sequenced through whole-genome shotgun sequencing using the Illumina platform, and phylogenetic analysis was carried out on the basis of 13 PCGs and two rRNAs. The complete T. cardis mitogenome comprised 16,761 bp, MN865118.
Cheng-He Sun, Peng Xu, Cai-Hong Lu, Qian Han, Yuan-Feng Lin, Zi-Jing Gao, Chang-Hu Lu   +6 more
doaj   +1 more source

An ontological morphological phylogenetic framework for living and extinct ray‐finned fishes (Actinopterygii)

The Anatomical Record, EarlyView.
Abstract The ray‐finned fishes include one out of every two species of living vertebrates on Earth and have an abundant fossil record stretching 380 million years into the past. The division of systematic knowledge of ray‐finned fishes between paleontologists working on extinct animals and neontologists studying extant species has obscured the ...
Jack Stack
wiley   +1 more source

MicroCT reinvestigation of the only articulated fossil anostomid fish reveals synonymy of Arhinolemur Ameghino, 1898 and Megaleporinus Ramirez et al., 2017

The Anatomical Record, EarlyView.
Abstract Arhinolemur scalabrinii† Ameghino, 1898 was originally described as a strepsirrhine primate (Mammalia) but has been recognized as an anostomid fish since 2012. It remains the only extinct anostomid species known from complete cranial material.
Karen M. Panzeri, Humberto L. Andrelino, Sergio Bogan, José P. O'Gorman, Federico Agnolín, Brian L. Sidlauskas, Nahuel Vega, Agustín G. Martinelli, José L. Birindelli   +8 more
wiley   +1 more source

Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods [PDF]

Biometrics, 1999
Summary.We derive a Markov chain to sample from the posterior distribution for a phylogenetic tree given sequence information from the corresponding set of organisms, a stochastic model for these data, and a prior distribution on the space of trees. A transformation of the tree into a canonical cophenetic matrix form suggests a simple and effective ...
Mau, Bob, Newton, Michael A., Larget, Bret   +2 more
openaire   +2 more sources

Early evolution of the gular musculature and its innervation in ray‐finned fishes

The Anatomical Record, EarlyView.
Abstract Gular muscles are an important but often overlooked component of cranial anatomy in bony fishes. They are located on the ventral surface of the head and are derived from the mandibular and hyoid arches. We present a comprehensive review of the gular musculature and its innervation across early diverging actinopterygian lineages. By integrating
Aléssio Datovo, Paulo Presti, George Vita, Murilo N. L. Pastana, Luiz A. W. Peixoto   +4 more
wiley   +1 more source

Tracheal chambers as a key innovation for high‐frequency emission in bat echolocation

The Anatomical Record, EarlyView.
Abstract Key innovations are pivotal for biodiversity and facilitating evolutionary success, enabling organisms' adaptation to various ecological niches through the diversification of phenotypic traits. In mammals, notable adaptations include evolving hypsodonty for grazing on grasses and, for bats, evolving echolocation and wing acquisition.
Nicolas L. M. Brualla, Laura A. B. Wilson, Khizar Hayat, Michael Doube, Vuong Tan Tu, Thongchai Ngamprasertwong, Thanakul Wannaprasert, Daisuke Koyabu   +7 more
wiley   +1 more source