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Virus classification based on in-depth sequence analyses and development of demarcation criteria using the Betaflexiviridae as a case study [PDF]
Journal of General Virology, 2022 Currently, many viruses are classified based on their genome organization and nucleotide/amino acid sequence identities of their capsid and replication-associated proteins. Although biological traits such as vector specificities and host range are also considered, this later information is scarce for the majority of recently identified viruses ...
João Marcos Fagundes Silva +2 more
exaly +7 more sources
Nucleotide sequence and genome organization of Dweet mottle virus and its relationship to members of the family Betaflexiviridae [PDF]
Archives of Virology, 2010 The nucleotide sequence of Dweet mottle virus (DMV) was determined and compared to sequences of members of the families Alphaflexiviridae and Betaflexiviridae. The DMV genome has 8,747 nucleotides (nt) excluding the 3' poly-(A) tail. DMV genomic RNA contains three putative open reading frames (ORFs) and untranslated regions of 73 nt at the 5' and 541 ...
Subhas Hajeri +2 more
exaly +6 more sources
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Archives of Virology, 2022
A new virus, tentatively named "kudzu virus D" (KuVD) was discovered in kudzu (Pueraria montana var. lobata) in South Korea. Its complete genome comprises 7,922 nucleotides, excluding the poly(A) tail, and contains five open reading frames (ORFs) encoding, from 5' to 3', a replicase (ORF1), three triple gene block proteins TGB1-3 (ORF2-ORF4), and a ...
Suk-Yoon Kwon +2 more
exaly +3 more sources
A new virus, tentatively named "kudzu virus D" (KuVD) was discovered in kudzu (Pueraria montana var. lobata) in South Korea. Its complete genome comprises 7,922 nucleotides, excluding the poly(A) tail, and contains five open reading frames (ORFs) encoding, from 5' to 3', a replicase (ORF1), three triple gene block proteins TGB1-3 (ORF2-ORF4), and a ...
Suk-Yoon Kwon +2 more
exaly +3 more sources
Novel Foveavirus (the family Betaflexiviridae) species identified in ginseng (Panax ginseng)
Acta Virologica, 2019 Ginseng (Panax ginseng) is a valuable herb that is widely cultivated in Korea, China, and Japan because it contains a variety of pharmacologically active substances with a wide range of positive effects on human health. Identification and prevention of disease-causing viral pathogens of ginseng is important for improving the yield and quality of ...
Duckchul Park
exaly +4 more sources
Acta Virologica, 2018 Transcriptome data obtained from a plant sample often contain a large number of reads that are derived from associated RNA virus genomes that were co-isolated during RNA preparation. These virus-derived reads can be assembled into a novel plant RNA genome sequence.
Duckchul Park
exaly +7 more sources
The complete nucleotide sequence and genome organisation of a novel member of the family Betaflexiviridae from Actinidia chinensis [PDF]
Archives of Virology, 2018 We report the complete genome sequence of a novel virus, tentatively named "actinidia seed-borne latent virus" (ASbLV), isolated from Actinidia chinensis in Auckland, New Zealand. The complete genome of ASbLV is 8,192 nucleotides long, excluding the 3' poly(A) tail, contains four open reading frames, and is most closely related to Caucasus prunus virus
Stella Veerakone, Joe Tang
exaly +3 more sources
Acta Virologica, 2019 Betaflexiviridae is a family of plant-infecting RNA viruses with 11 recognized genera, of which genomes have diverse organization with three to six open reading frames (ORFs). A genome sequence of a novel Betaflexiviridae species, named Salvia divinorum RNA virus 1 (SdRV1), was identified in Salvia divinorum, herbal mint plant with hallucinogenic ...
C J, Goh, Y, Hahn
exaly +4 more sources