Results 1 to 10 of about 2,499 (218)

Student biocuration projects as a learning environment [version 2; peer review: 2 approved] [PDF]

F1000Research, 2022
Background: Bioinformatics is becoming an essential tool for the majority of biological and biomedical researchers. Although bioinformatics data is exploited by academic and industrial researchers, limited focus is on teaching this area to undergraduates,
Ruth C. Lovering, Katherine E. Thurlow, Sandra De Miranda Pinheiro   +2 more
doaj   +8 more sources

Biocuration: Distilling data into knowledge. [PDF]

PLoS Biology, 2018
Data, including information generated from them by processing and analysis, are an asset with measurable value. The assets that biological research funding produces are the data generated, the information derived from these data, and, ultimately, the ...
International Society for Biocuration
doaj   +7 more sources

Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (Oryza sativa) [PDF]

Plants, 2023
Modeling biological processes and genetic-regulatory networks using in silico approaches provides a valuable framework for understanding how genes and associated allelic and genotypic differences result in specific traits.
Sushma Naithani, Bijayalaxmi Mohanty, Justin Elser, Peter D’Eustachio, Pankaj Jaiswal   +4 more
doaj   +4 more sources

Automatic categorization of diverse experimental information in the bioscience literature [PDF]

BMC Bioinformatics, 2012
Background Curation of information from bioscience literature into biological knowledge databases is a crucial way of capturing experimental information in a computable form.
Fang Ruihua, Schindelman Gary, Auken Kimberly, Fernandes Jolene, Chen Wen, Wang Xiaodong, Davis Paul, Tuli Mary, Marygold Steven J, Millburn Gillian, Matthews Beverley, Zhang Haiyan, Brown Nick, Gelbart William M, Sternberg Paul W   +14 more
doaj   +6 more sources

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).

PLoS Computational Biology, 2021
Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying gene
Jolene Ramsey, Brenley McIntosh, Daniel Renfro, Suzanne A Aleksander, Sandra LaBonte, Curtis Ross, Adrienne E Zweifel, Nathan Liles, Shabnam Farrar, Jason J Gill, Ivan Erill, Sarah Ades, Tanya Z Berardini, Jennifer A Bennett, Siobhan Brady, Robert Britton, Seth Carbon, Steven M Caruso, Dave Clements, Ritu Dalia, Meredith Defelice, Erin L Doyle, Iddo Friedberg, Susan M R Gurney, Lee Hughes, Allison Johnson, Jason M Kowalski, Donghui Li, Ruth C Lovering, Tamara L Mans, Fiona McCarthy, Sean D Moore, Rebecca Murphy, Timothy D Paustian, Sarah Perdue, Celeste N Peterson, Birgit M Prüß, Margaret S Saha, Robert R Sheehy, John T Tansey, Louise Temple, Alexander William Thorman, Saul Trevino, Amy Cheng Vollmer, Virginia Walbot, Joanne Willey, Deborah A Siegele, James C Hu   +47 more
doaj   +4 more sources

UIMA in the Biocuration Workflow: A coherent framework for cooperation between biologists and computational linguists [PDF]

, 2009
As collaborating partners, Barcelona Media Innovation Centre and GRIB (Universitat Pompeu Fabra) seek to combine strengths from Computational Linguistics and Biomedicine to produce a robust Text Mining system to generate data that will help biocurators ...
Bart Mellebeek, Carlos Rodriguez-Penagos, Laura Ines Furlong   +2 more
core   +4 more sources

Automatic identification of scientific publications describing digital reconstructions of neural morphology [PDF]

Brain Informatics, 2023
The increasing number of peer-reviewed publications constitutes a challenge for biocuration. For example, NeuroMorpho.Org, a sharing platform for digital reconstructions of neural morphology, must evaluate more than 6000 potentially relevant articles per
Patricia Maraver, Carolina Tecuatl, Giorgio A. Ascoli   +2 more
doaj   +2 more sources

Network Analysis to Identify MicroRNAs Involved in Alzheimer’s Disease and to Improve Drug Prioritization [PDF]

Biomedicines
Background: Advances in the understanding of molecular mechanisms of human diseases, along with the generation of large amounts of molecular datasets, have highlighted the variability between patients and the need to tailor therapies to individual ...
Aldo Reyna, Simona Panni
doaj   +2 more sources

TrialSieve: A Comprehensive Biomedical Information Extraction Framework for PICO, Meta-Analysis, and Drug Repurposing [PDF]

Bioengineering
This work introduces TrialSieve, a novel framework for biomedical information extraction that enhances clinical meta-analysis and drug repurposing. By extending traditional PICO (Patient, Intervention, Comparison, Outcome) methodologies, TrialSieve ...
David Kartchner, Haydn Turner, Christophe Ye, Irfan Al-Hussaini, Batuhan Nursal, Albert J. B. Lee, Jennifer Deng, Courtney Curtis, Hannah Cho, Eva L. Duvaris, Coral Jackson, Catherine E. Shanks, Sarah Y. Tan, Selvi Ramalingam, Cassie S. Mitchell   +14 more
doaj   +2 more sources

Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0. [PDF]

Brief Bioinform
Blin K, Loureiro C, Louwen NLL, Navarro-Muñoz JC, Gerstmans H, Robinson SL, Rutz A, Reitz ZL, Doering DT, van der Hooft JJJ, Weber T, Medema MH, Zdouc MM.   +12 more
europepmc   +3 more sources