Results 41 to 50 of about 1,082 (162)

Automatic categorization of diverse experimental information in the bioscience literature

BMC Bioinformatics, 2012
Background Curation of information from bioscience literature into biological knowledge databases is a crucial way of capturing experimental information in a computable form.
Fang Ruihua, Schindelman Gary, Auken Kimberly, Fernandes Jolene, Chen Wen, Wang Xiaodong, Davis Paul, Tuli Mary, Marygold Steven J, Millburn Gillian, Matthews Beverley, Zhang Haiyan, Brown Nick, Gelbart William M, Sternberg Paul W   +14 more
doaj   +1 more source

IMGT^® Biocuration and Analysis of the Rhesus Monkey IG Loci

Vaccines, 2022
The adaptive immune system, along with the innate immune system, are the two main biological processes that protect an organism from pathogens. The adaptive immune system is characterized by the specificity and extreme diversity of its antigen receptors.
Viviane Nguefack Ngoune, Morgane Bertignac, Maria Georga, Ariadni Papadaki, Alexandre Albani, Géraldine Folch, Joumana Jabado-Michaloud, Véronique Giudicelli, Patrice Duroux, Marie-Paule Lefranc, Sofia Kossida   +10 more
doaj   +1 more source

Citizen Science for Mining the Biomedical Literature

Citizen Science: Theory and Practice, 2016
Biomedical literature represents one of the largest and fastest growing collections of unstructured biomedical knowledge. Finding critical information buried in the literature can be challenging. To extract information from free-flowing text, researchers
Ginger Tsueng, Steven M. Nanis, Jennifer Fouquier, Benjamin M. Good, Andrew I. Su   +4 more
doaj   +1 more source

Data libraries – the missing element for modeling biological systems

The FEBS Journal, Volume 287, Issue 21, Page 4594-4601, November 2020., 2020
Data integration critically depends on data being available in an organized form, so that they can be accessed, understood, and reused. A proven solution for organizing data is literature curation, which is instrumental for integrating findings across publications.
Anastasia Baryshnikova
wiley   +1 more source

Virk: An Active Learning-based System for Bootstrapping Knowledge Base Development in the Neurosciences

Frontiers in Neuroinformatics, 2013
The frequency and volume of newly-published scientific literature is quickly making manual maintenance of publicly-available databases of primary data unrealistic and costly.
Kyle H. Ambert, Aaron M. Cohen, Gully APC Burns, Eilis eBoudreau, Kemal eSonmez   +4 more
doaj   +1 more source

Use of the Protein Ontology (PRO) for Multi-Faceted Analysis of Biological Processes: a Case Study of the Spindle Checkpoint

Frontiers in Genetics, 2013
As a member of the Open Biomedical Ontologies (OBO) foundry, the Protein Ontology (PRO) provides an ontological representation of protein forms and complexes and their relationships.
Karen E Ross, Cecilia N Arighi, Jia eRen, Darren A Natale, Hongzhan eHuang, Cathy H Wu   +5 more
doaj   +1 more source

A behind‐the‐scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts

Immunology, Volume 161, Issue 2, Page 139-147, October 2020., 2020
The Immune Epitope Database and Analysis Resource (IEDB) provides the scientific community with open access to epitope data, as well as epitope prediction and analysis tools. Herein, we provide insights into an objective analysis of our data identification, categorization, curation and quality‐checking processes.
Nima Salimi, Lindy Edwards, Gabriele Foos, Jason A. Greenbaum, Sheridan Martini, Brian Reardon, Deborah Shackelford, Randi Vita, Leora Zalman, Bjoern Peters, Alessandro Sette   +10 more
wiley   +1 more source

A journey in biocuration

, 2021
Presentation done by Anne Niknejad for the Biocuration Career Award 2021, at the ISB, International Society of Biocuration, description of biocuration work over ...
openaire   +1 more source

Dizeez: an online game for human gene-disease annotation. [PDF]

PLoS ONE, 2013
Structured gene annotations are a foundation upon which many bioinformatics and statistical analyses are built. However the structured annotations available in public databases are a sparse representation of biological knowledge as a whole.
Salvatore Loguercio, Benjamin M Good, Andrew I Su   +2 more
doaj   +1 more source

Current status of the multinational Arabidopsis community

Plant Direct, Volume 4, Issue 7, July 2020., 2020
Abstract The multinational Arabidopsis research community is highly collaborative and over the past thirty years these activities have been documented by the Multinational Arabidopsis Steering Committee (MASC). Here, we (a) highlight recent research advances made with the reference plant Arabidopsis thaliana; (b) provide summaries from recent reports ...
Geraint Parry, Nicholas J. Provart, Siobhan M. Brady, Baris Uzilday, The Multinational Arabidopsis Steering Committee, Keith Adams, Wagner Araújo, Sébastien Aubourg, Sacha Baginsky, Erica Bakker, Katja Bärenfaller, Jacqui Batley, Mike Beale, Mark Beilstein, Youssef Belkhadir, Gregor Mendel, Tanya Berardini, Joy Bergelson, Francisca Blanco‐Herrera, Siobhan Brady, Hans‐Peter Braun, Steve Briggs, Lynette Brownfield, Maura Cardarelli, Marcos Castellanos‐Uribe, Gloria Coruzzi, Maheshi Dassanayake, Geert De Jaeger, Brian Dilkes, Colleen Doherty, Joe Ecker, Pat Edger, David Edwards, Farid El Kasmi, Maria Eriksson, Moises Exposito‐Alonso, Pascal Falter‐Braun, Alisdair Fernie, Myriam Ferro, Oliver Fiehn, Joanna Friesner, Katie Greenham, Yalong Guo, Thorsten Hamann, Angela Hancock, Marie‐Theres Hauser, Joshua Heazlewood, Cheng‐Hsun Ho, Hanna Hõrak, Eva Huala, Inhwan Hwang, Satoshi Iuchi, Pankaj Jaiswal, Liina Jakobson, Yunhe Jiang, Yuling Jiao, Alexandra Jones, Yasuhiro Kadota, Jitendra Khurana, Dan Kliebenstein, Emma Knee, Masatomo Kobayashi, Marcus Koch, Gabriel Krouk, Tony Larson, Rob Last, Loïc Lepiniec, Song Li, Claire Lurin, Martin Lysak, Steven Maere, Robert Malinowski, Florian Maumus, Sean May, Klaus Mayer, David Mendoza‐Cozatl, Isabel Mendoza‐Poudereux, José Luis Micol, Harvey Millar, Hans‐Peter Mock, Karolina Mukhtar, Shahid Mukhtar, Monika Murcha, Hirofumi Nakagami, Yasukazu Nakamura, Luke Nicolov, Basil Nikolau, Moritz Nowack, Adriano Nunes‐Nesi, Michael Palmgren, Geraint Parry, Nicola Patron, Scott Peck, Ullas Pedmale, Catherine Perrot‐Rechenmann, Roland Pieruschka, José Pío‐Beltrán, J. Chris Pires, Nicholas Provart, Loïc Rajjou, Leonore Reiser, Sue Rhee, Stamatis Rigas, Norbert Rolland, Andres Romanowski, Sigal Savaldi‐Goldstein, Robert Schmitz, Waltraud Schulze, Motoaki Seki, Kentaro K. Shimizu, Keith Slotkin, Ian Small, David Somers, Rosangela Sozzani, Charles Spillane, Ramamurthy Srinivasan, Nicolas Taylor, Marcela‐Karey Tello‐Ruiz, Jay Thelen, Takayuki Tohge, Christopher Town, Tetsuro Toyoda, Baris Uzilday, Justin Walley, Doreen Ware, Wolfram Weckwerth, Julian Whitelegge, Stefanie Wienkoop, Clay Wright, Michael Wrzaczek, Misako Yamazaki, Marcelo Yanovsky, Viktor Žárský, Xuehua Zhong, Yves Van De Peer, Klaas Van Wijk, Philipp Von Gillhaussen   +136 more
wiley   +1 more source