Results 81 to 90 of about 2,499 (218)

A FAIR-Based Approach to Enhancing the Discovery and Re-Use of Transcriptomic Data Assets for Nuclear Receptor Signaling Pathways

open access: yesData Science Journal, 2017
Public transcriptomic assets in the nuclear receptor (NR) signaling field hold considerable collective potential for exposing underappreciated aspects of NR regulation of gene expression.
Scott A. Ochsner   +6 more
doaj   +1 more source

Mechanisms of action of monoclonal antibodies in oncology integrated in IMGT/mAb-DB

open access: yesFrontiers in Immunology, 2023
BackgroundCancer cells activate different immune checkpoint (IC) pathways in order to evade immunosurveillance. Immunotherapies involving ICs either block or stimulate these pathways and enhance the efficiency of the immune system to recognize and attack
Taciana Manso   +5 more
doaj   +1 more source

BC4GO: a full-text corpus for the BioCreative IV GO task [PDF]

open access: yes, 2014
Gene function curation via Gene Ontology (GO) annotation is a common task among Model Organism Database groups. Owing to its manual nature, this task is considered one of the bottlenecks in literature curation.
Arighi, Cecilia N.   +14 more
core   +1 more source

CardioTF, a database of deconstructing transcriptional circuits in the heart system [PDF]

open access: yesPeerJ, 2016
Background: Information on cardiovascular gene transcription is fragmented and far behind the present requirements of the systems biology field. To create a comprehensive source of data for cardiovascular gene regulation and to facilitate a deeper ...
Yisong Zhen
doaj   +2 more sources

Development of GCP Ontology for sharing crop information [PDF]

open access: yes, 2015
Poster presented at 3rd International Biocuration Conference.
Arnaud, Elizabeth   +4 more
core  

Databases and bioinformatics tools for rice research

open access: yesCurrent Plant Biology, 2016
Rice is one of the most important agricultural crop in the world and widely studied model plant. The completion of whole genome sequence of rice (Oryza sativa) and high-throughput experimental platforms have led to the generation of the tremendous amount
Priyanka Garg, Pankaj Jaiswal
doaj   +1 more source

SpBase: the sea urchin genome database and web site [PDF]

open access: yes, 2008
SpBase is a system of databases focused on the genomic information from sea urchins and related echinoderms. It is exposed to the public through a web site served with open source software (http://spbase.org/). The enterprise was undertaken to provide an
A. Yuan   +24 more
core   +4 more sources

Using random forests for assistance in the curation of G-protein coupled receptor databases [PDF]

open access: yes, 2017
Background: Biology is experiencing a gradual but fast transformation from a laboratory-centred science towards a data-centred one. As such, it requires robust data engineering and the use of quantitative data analysis methods as part of database ...
Shkurin, Aleksei   +1 more
core   +2 more sources

Jointly creating digital abstracts: dealing with synonymy and polysemy

open access: yesBMC Research Notes, 2012
Background Ideally each Life Science article should get a ‘structured digital abstract’. This is a structured summary of the paper’s findings that is both human-verified and machine-readable.
Vercruysse Steven, Kuiper Martin
doaj   +1 more source

C/VDdb: A multi-omics expression profiling database for a knowledge-driven approach in cardiovascular disease (CVD). [PDF]

open access: yesPLoS ONE, 2018
The cardiovascular disease (C/VD) database is an integrated and clustered information resource that covers multi-omic studies (microRNA, genomics, proteomics and metabolomics) of cardiovascular-related traits with special emphasis on coronary artery ...
Marco Fernandes   +2 more
doaj   +1 more source

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