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Control in Boolean Networks With Model Checking

open access: yesFrontiers in Applied Mathematics and Statistics, 2022
Understanding control mechanisms in biological systems plays a crucial role in important applications, for instance in cell reprogramming. Boolean modeling allows the identification of possible efficient strategies, helping to reduce the usually high and
Laura Cifuentes-Fontanals   +3 more
doaj   +6 more sources

A Novel Data-Driven Boolean Model for Genetic Regulatory Networks [PDF]

open access: yesFrontiers in Physiology, 2018
A Boolean model is a simple, discrete and dynamic model without the need to consider the effects at the intermediate levels. However, little effort has been made into constructing activation, inhibition, and protein decay networks, which could indicate ...
Leshi Chen   +2 more
doaj   +2 more sources

A continuous-time stochastic Boolean model provides a quantitative description of the budding yeast cell cycle [PDF]

open access: yesScientific Reports, 2022
The cell division cycle is regulated by a complex network of interacting genes and proteins. The control system has been modeled in many ways, from qualitative Boolean switching-networks to quantitative differential equations and highly detailed ...
Teeraphan Laomettachit   +2 more
doaj   +2 more sources

EXACT SIMULATION OF A BOOLEAN MODEL

open access: yesImage Analysis and Stereology, 2013
A Boolean model is a union of independent objects (compact random subsets) located at Poisson points. Two algorithms are proposed for simulating a Boolean model in a bounded domain. The first one applies only to stationary models.
Christian Lantuéjoul
doaj   +4 more sources

Insights on TAM Formation from a Boolean Model of Macrophage Polarization Based on In Vitro Studies. [PDF]

open access: yesCancers (Basel), 2020
Marku M   +8 more
europepmc   +2 more sources

ON/OFF and beyond--a boolean model of apoptosis. [PDF]

open access: yesPLoS Computational Biology, 2009
Apoptosis is regulated by several signaling pathways which are extensively linked by crosstalks. Boolean or logical modeling has become a promising approach to capture the qualitative behavior of such complex networks.
Rebekka Schlatter   +8 more
doaj   +2 more sources

Qualitative Modeling for Bridging Expert-Knowledge and Social-Ecological Dynamics of an East African Savanna

open access: yesLand, 2021
Sub-Saharan social-ecological systems are undergoing changes in environmental conditions, including modifications in rainfall pattern and biodiversity loss. Consequences of such changes depend on complex causal chains which call for integrated management
Maximilien Cosme   +6 more
doaj   +1 more source

Local Measures Distribution for the Estimation of the Elongation Ratio of the Typical Grain in Homogeneous Boolean Models

open access: yesImage Analysis and Stereology, 2021
We introduce a particular localization of the Minkowski functionals to characterize and discriminate different random spatial structures. The aim of this paper is to present a method estimating the typical grain elongation ratio in a homogeneous Boolean ...
Tatyana Eremina   +3 more
doaj   +1 more source

To Express Required CT-Scan Resolution for Porosity and Saturation Calculations in Terms of Average Grain Sizes [PDF]

open access: yesJournal of Petroleum Science and Technology, 2018
Despite advancements in specifying 3D internal microstructure of reservoir rocks, identifying some sensitive phenomenons are still problematic particularly due to image resolution limitation.
Ahmed Zoeir, Jafar Qajar
doaj   +1 more source

Boolean models

open access: yes, 2023
The topic of this survey are geometric functionals of a Boolean model (in Euclidean space) governed by a stationary Poisson process of convex grains. The Boolean model is a fundamental benchmark of stochastic geometry and continuum percolation. Moreover, it is often used to model amorphous connected structures in physics, materials science and biology.
Hug, Daniel   +2 more
openaire   +3 more sources

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