Results 11 to 20 of about 167,571 (284)
Cyclic Attractors Are Critical for Macrophage Differentiation, Heterogeneity, and Plasticity
Frontiers in Molecular Biosciences, 2022 Adaptability, heterogeneity, and plasticity are the hallmarks of macrophages. How these complex properties emerge from the molecular interactions is an open question. Thus, in this study we propose an actualized regulatory network of cytokines, signaling
Manuel Azaid Ordaz-Arias +7 more
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Quantum annealing algorithms for Boolean tensor networks
Scientific Reports, 2022 Quantum annealers manufactured by D-Wave Systems, Inc., are computational devices capable of finding high-quality heuristic solutions of NP-hard problems.
Elijah Pelofske +4 more
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Synchronizing Boolean Networks Asynchronously
SSRN Electronic Journal, 2022 The {\em asynchronous automaton} associated with a Boolean network $f:\{0,1\}^n\to\{0,1\}^n$, considered in many applications, is the finite deterministic automaton where the set of states is $\{0,1\}^n$, the alphabet is $[n]$, and the action of letter $i$ on a state $x$ consists in either switching the $i$th component if $f_i(x)\neq x_i$ or doing ...
Julio Aracena +2 more
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A parallel attractor-finding algorithm based on Boolean satisfiability for genetic regulatory networks. [PDF]
PLoS ONE, 2014 In biological systems, the dynamic analysis method has gained increasing attention in the past decade. The Boolean network is the most common model of a genetic regulatory network.
Wensheng Guo +4 more
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Interplay between degree and Boolean rules in the stability of Boolean networks
, 2021 Empirical evidence has revealed that biological regulatory systems are controlled by high-level coordination between topology and Boolean rules. In this study, we study the joint effects of degree and Boolean functions on the stability of Boolean ...
Min, Byungjoon
core +1 more source
An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data. [PDF]
PLoS ONE, 2013 Regulatory networks play a central role in cellular behavior and decision making. Learning these regulatory networks is a major task in biology, and devising computational methods and mathematical models for this task is a major endeavor in ...
Natalie Berestovsky, Luay Nakhleh
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Asynchronous Simulation of Boolean Networks by Monotone Boolean Networks [PDF]
, 2016 To appear in the proceedings of ACA 2016 (fourth International Workshop on Asynchronous Cellular Automata and Asynchronous Discrete Models)
Melliti, Tarek +3 more
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Modular Random Boolean Networks [PDF]
Artificial Life, 2011 Random Boolean networks (RBNs) have been a popular model of genetic regulatory networks for more than four decades. However, most RBN studies have been made with random topologies, while real regulatory networks have been found to be modular. In this work, we extend classical RBNs to define modular RBNs.
Poblanno-Balp, Rodrigo +1 more
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Review and assessment of Boolean approaches for inference of gene regulatory networks
Heliyon, 2022 Boolean descriptions of gene regulatory networks can provide an insight into interactions between genes. Boolean networks hold predictive power, are easy to understand, and can be used to simulate the observed networks in different scenarios.We review ...
Žiga Pušnik +3 more
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Boolean Networks as Modeling Framework [PDF]
Frontiers in Plant Science, 2012 In a network, the components of a given system are represented as nodes, the interactions are abstracted as links between the nodes. Boolean networks refer to a class of dynamics on networks, in fact it is the simplest possible dynamics where each node has a value 0 or 1.
Florian eGreil, Florian eGreil
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