Results 21 to 30 of about 167,571 (284)
Computing preimages of Boolean networks [PDF]
BMC Bioinformatics, 2013 Submitted to WCSB ...
Klotz, Johannes +2 more
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Extending boolean regulatory network models with answer set programming [PDF]
, 2010 Because of their simplicity, boolean networks are a popular formalism to model gene regulatory networks. However, they have their limitations, including their inability to formally and unambiguously define network behaviour, and their lack of the ...
Fayruzov, Timur +4 more
core +2 more sources
Stability of Boolean multilevel networks [PDF]
Physical Review E, 2012 Final version.
Cozzo, Emanuele +2 more
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Symmetrizable Boolean networks
Information Sciences, 2023 In this work, we provide a procedure that allows us to transform certain kinds of deterministic Boolean networks on minterm or maxterm functions into symmetric ones, so inferring that such symmetrizable networks can present only periodic points of periods 1 or 2. In particular, we deal with generalized parallel (or synchronous) dynamical systems (GPDS)
Aledo Sánchez, Juan Ángel +4 more
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Boolean network model predicts knockout mutant phenotypes of fission yeast. [PDF]
PLoS ONE, 2013 Boolean networks (ornetworks of switches) are extremely simple mathematical models of biochemical signaling networks. Under certain circumstances, Boolean networks, despite their simplicity, are capable of predicting dynamical activation patterns of gene
Maria I Davidich, Stefan Bornholdt
doaj +1 more source
Evolving Sensitivity Balances Boolean Networks [PDF]
PLoS ONE, 2012 We investigate the sensitivity of Boolean Networks (BNs) to mutations. We are interested in Boolean Networks as a model of Gene Regulatory Networks (GRNs). We adopt Ribeiro and Kauffman's Ergodic Set and use it to study the long term dynamics of a BN.
Jamie X Luo, Matthew S Turner
openaire +4 more sources
BMC Bioinformatics, 2017 Background Gene regulatory networks govern the function of key cellular processes, such as control of the cell cycle, response to stress, DNA repair mechanisms, and more.
Levi D. Mcclenny +2 more
doaj +1 more source
Systematic review of brucellosis in the Middle East: disease frequency in ruminants and humans and risk factors for human infection [PDF]
, 2007 This paper considers the problem of finding global states incoming to a specified global state in a Boolean network, which may be useful for pre-processing of finding a sequence of control actions for a Boolean network and for identifying the basin of ...
Abo-Shehada, M N +4 more
core +2 more sources
On the Lyapunov Exponent of Monotone Boolean Networks †
Mathematics, 2020 Boolean networks are discrete dynamical systems comprised of coupled Boolean functions. An important parameter that characterizes such systems is the Lyapunov exponent, which measures the state stability of the system to small perturbations.
Ilya Shmulevich
doaj +1 more source
A fixed point theorem for Boolean networks expressed in terms of forbidden subnetworks [PDF]
Discrete Mathematics & Theoretical Computer Science, 2011 We are interested in fixed points in Boolean networks, $\textit{i.e.}$ functions $f$ from $\{0,1\}^n$ to itself. We define the subnetworks of $f$ as the restrictions of $f$ to the hypercubes contained in $\{0,1\}^n$, and we exhibit a class $\mathcal{F ...
Adrien Richard
doaj +1 more source