Results 21 to 30 of about 140,409 (275)
Boolean network model predicts knockout mutant phenotypes of fission yeast. [PDF]
PLoS ONE, 2013 Boolean networks (ornetworks of switches) are extremely simple mathematical models of biochemical signaling networks. Under certain circumstances, Boolean networks, despite their simplicity, are capable of predicting dynamical activation patterns of gene
Maria I Davidich, Stefan Bornholdt
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Synchronizing Boolean Networks Asynchronously
SSRN Electronic Journal, 2022 The {\em asynchronous automaton} associated with a Boolean network $f:\{0,1\}^n\to\{0,1\}^n$, considered in many applications, is the finite deterministic automaton where the set of states is $\{0,1\}^n$, the alphabet is $[n]$, and the action of letter $i$ on a state $x$ consists in either switching the $i$th component if $f_i(x)\neq x_i$ or doing ...
Julio Aracena +2 more
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Interplay between degree and Boolean rules in the stability of Boolean networks
, 2021 Empirical evidence has revealed that biological regulatory systems are controlled by high-level coordination between topology and Boolean rules. In this study, we study the joint effects of degree and Boolean functions on the stability of Boolean ...
Min, Byungjoon
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Asynchronous Simulation of Boolean Networks by Monotone Boolean Networks [PDF]
, 2016 To appear in the proceedings of ACA 2016 (fourth International Workshop on Asynchronous Cellular Automata and Asynchronous Discrete Models)
Melliti, Tarek +3 more
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Modular Random Boolean Networks [PDF]
Artificial Life, 2011 Random Boolean networks (RBNs) have been a popular model of genetic regulatory networks for more than four decades. However, most RBN studies have been made with random topologies, while real regulatory networks have been found to be modular. In this work, we extend classical RBNs to define modular RBNs.
Poblanno-Balp, Rodrigo +1 more
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Computing preimages of Boolean networks [PDF]
BMC Bioinformatics, 2013 Submitted to WCSB ...
Klotz, Johannes +2 more
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On the Periodic Structure of Parallel Dynamical Systems on Generalized Independent Boolean Functions
Mathematics, 2020 In this paper, based on previous results on AND-OR parallel dynamical systems over directed graphs, we give a more general pattern of local functions that also provides fixed point systems.
Juan A. Aledo +4 more
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Stability of Boolean multilevel networks [PDF]
Physical Review E, 2012 Final version.
Cozzo, Emanuele +2 more
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Symmetrizable Boolean networks
Information Sciences, 2023 In this work, we provide a procedure that allows us to transform certain kinds of deterministic Boolean networks on minterm or maxterm functions into symmetric ones, so inferring that such symmetrizable networks can present only periodic points of periods 1 or 2. In particular, we deal with generalized parallel (or synchronous) dynamical systems (GPDS)
Aledo Sánchez, Juan Ángel +4 more
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Synchronization of Coupled Boolean Networks With Different Update Scheme
IEEE Access, 2020 In this paper, the synchronization of coupled Boolean networks with asynchronous update scheme is investigated. First, the asynchronous Boolean dynamics is transformed into a linear expression with the semi-tensor product technique.
Yujun Niu, Hongjun Liu, Qiang Wei
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