Results 21 to 30 of about 66,193 (232)

BSA‑seq and genetic mapping reveals AhRt2 as a candidate gene responsible for red testa of peanut [PDF]

Theoretical and Applied Genetics, 2021
Abstract Testa color is an important trait of peanut (Arachis hypogaea L.). Peanuts with red testa are rich in anthocyanin, are very popular with consumers. However, genes responsible for the red testa trait in peanut are rarely reported. In order to fine map red testa gene, two F4 populations were constructed through the cross of YZ9102 (pink ...
Kun Zhang, Mei Yuan, Han Xia, Liangqiong He, Jing Ma, Mingxiao Wang, Huiling Zhao, Lei Hou, Shuzhen Zhao, Pengcheng Li, Ruizheng Tian, Jiaowen Pan, Guanghui Li, Mahendar Thudi, Changle Ma, Xingjun Wang, Chuanzhi Zhao   +16 more
openaire   +2 more sources

Gene mapping via bulked segregant RNA-Seq (BSR-Seq). [PDF]

PLoS ONE, 2012
Bulked segregant analysis (BSA) is an efficient method to rapidly and efficiently map genes responsible for mutant phenotypes. BSA requires access to quantitative genetic markers that are polymorphic in the mapping population.
Sanzhen Liu, Cheng-Ting Yeh, Ho Man Tang, Dan Nettleton, Patrick S Schnable   +4 more
doaj   +1 more source

Mapping a Partial Andromonoecy Locus in Citrullus lanatus Using BSA-Seq and GWAS Approaches [PDF]

Frontiers in Plant Science, 2020
The sexual expression of watermelon plants is the result of the distribution and occurrence of male, female, bisexual and hermaphrodite flowers on the main and secondary stems. Plants can be monoecious (producing male and female flowers), andromonoecious (producing male and hermaphrodite flowers), or partially andromonoecious (producing male, female ...
Aguado, E., García, A., Iglesias-Moya, J., Romero, J., Wehner, T.C., Gómez-Guillamón, M.L., Picó, B., Garcés-Claver, A., Martínez, C., Jamilena, M.   +9 more
openaire   +6 more sources

Rapid Mining of Candidate Genes for Verticillium Wilt Resistance in Cotton Based on BSA-Seq Analysis [PDF]

Frontiers in Plant Science, 2021
Cotton is a globally important cash crop. Verticillium wilt (VW) is commonly known as “cancer” of cotton and causes serious loss of yield and fiber quality in cotton production around the world. Here, we performed a BSA-seq analysis using an F2:3 segregation population to identify the candidate loci involved in VW resistance.
Yanli Cui, Yanli Cui, Qun Ge, Pei Zhao, Wei Chen, Xiaohui Sang, Yunlei Zhao, Quanjia Chen, Hongmei Wang   +8 more
openaire   +3 more sources

PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data

BMC Bioinformatics, 2020
Background Bulked segregant analysis (BSA), coupled with next-generation sequencing, allows the rapid identification of both qualitative and quantitative trait loci (QTL), and this technique is referred to as BSA-Seq here.
Jianbo Zhang, Dilip R. Panthee
doaj   +1 more source

Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches

BMC Genomics, 2022
Background Bulk segregant analysis (BSA) combined with next generation sequencing is a powerful tool to identify quantitative trait loci (QTL). The impact of the size of the study population and the percentage of extreme genotypes analysed have already ...
Carla de la Fuente Cantó, Yves Vigouroux   +1 more
doaj   +1 more source

BSA-seq in Maize v1 [PDF]

, 2018
In the past, identifying a gene of interest for a mutant phenotype in maize has proven to be a laborious process. Now, with the aid of next generation sequencing technology, the researcher can quickly identify the region containing a mutant gene and in some cases identify the causative lesion.
Harry Klein, Yuguo Xiao, Phillip A. Conklin, Rajanikanth Govindarajulu, Jacob A. Kelly, Michael J. Scanlon, Clinton J. Whipple, Madelaine Bartlett   +7 more
openaire   +1 more source

Identification of a Branch Number Locus in Soybean Using BSA-Seq and GWAS Approaches. [PDF]

Int J Mol Sci
The determination of the soybean branch number plays a pivotal role in plant morphogenesis and yield components. This polygenic trait is subject to environmental influences, and despite its significance, the genetic mechanisms governing the soybean branching number remain incompletely understood.
Dai D, Huang L, Zhang X, Zhang S, Yuan Y, Wu G, Hou Y, Yuan X, Chen X, Xue C.   +9 more
europepmc   +3 more sources

A Robust and Rapid Candidate Gene Mapping Pipeline Based on M2 Populations

Frontiers in Plant Science, 2021
The whole-genome sequencing-based bulked segregant analysis (WGS-BSA) has facilitated the mapping candidate causal variations for cloning target plant genes.
Huangkai Zhou, Huangkai Zhou, Kuanqiang Tang, Kuanqiang Tang, Guang Li, Guang Li, Wenqiang Liu, Hui Yu, Xiaohui Yuan, Suxin Yang, Madan K. Bhattacharyya, Xianzhong Feng   +11 more
doaj   +1 more source

Identification of candidate gene controlling TSSL via BSA-seq and fine mapping and germplasm innovation in rice. [PDF]

BMC Genomics
Stigma exsertion ratio (SER) of rice male sterile line directly affects the hybrid rice F1 seed production, while SER was directly affected by the total of stigma and style length (TSSL). To improve the F1 seed production, it is necessary to identify the genes or quantitative trait loci (QTLs) controlling TSSL.
Dang X, Wang W, Liu J, Jing C, Hu C, Li J, Shen J, Liu E, Jiang J.   +8 more
europepmc   +4 more sources