Results 11 to 20 of about 263,021 (286)

dbCAN3: automated carbohydrate-active enzyme and substrate annotation. [PDF]

Nucleic Acids Res, 2023
Abstract Carbohydrate active enzymes (CAZymes) are made by various organisms for complex carbohydrate metabolism. Genome mining of CAZymes has become a routine data analysis in (meta-)genome projects, owing to the importance of CAZymes in bioenergy, microbiome, nutrition, agriculture, and global carbon recycling.
Zheng J, Ge Q, Yan Y, Zhang X, Huang L, Yin Y.   +5 more
europepmc   +5 more sources

The carbohydrate-active enzyme database: functions and literature. [PDF]

Nucleic Acids Res, 2022
Abstract Thirty years have elapsed since the emergence of the classification of carbohydrate-active enzymes in sequence-based families that became the CAZy database over 20 years ago, freely available for browsing and download at www.cazy.org.
Drula E, Garron ML, Dogan S, Lombard V, Henrissat B, Terrapon N.   +5 more
europepmc   +9 more sources

PlantCAZyme: a database for plant carbohydrate-active enzymes [PDF]

Database, 2014
PlantCAZyme is a database built upon dbCAN (database for automated carbohydrate active enzyme annotation), aiming to provide pre-computed sequence and annotation data of carbohydrate active enzymes (CAZymes) to plant carbohydrate and bioenergy research ...
Ekstrom, Alexander, McGinn, Nathan, Taujale, Rahil, Yin, Yanbin   +3 more
core   +7 more sources

CAZac: an activity descriptor for carbohydrate-active enzymes

Nucleic Acids Research
Abstract The Carbohydrate-Active enZYme database (CAZy; www.cazy.org) has been providing the reference classification of carbohydrate-active enzymes (CAZymes) for >30 years. Based on literature survey, the sequence-based families of CAZymes are enriched with functional data by using the International Union of Biochemistry and ...
Lombard, Vincent, Henrissat, Bernard, Garron, Marie-Line   +2 more
openaire   +7 more sources

Carbohydrate-active enzymes in animal feed

Biotechnology Advances, 2023
Considering an ever-growing global population, which hit 8 billion people in the fall of 2022, it is essential to find solutions to avoid the competition between human food and animal feed for croplands. Agricultural co-products have become important components of the circular economy with their use in animal feed.
Plouhinec, Lauriane, Neugnot, Virginie, Lafond, Mickael, Berrin, Jean‐guy   +3 more
openaire   +4 more sources

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. [PDF]

Nucleic Acids Res, 2018
Zhang H, Yohe T, Huang L, Entwistle S, Wu P, Yang Z, Busk PK, Xu Y, Yin Y.   +8 more
europepmc   +2 more sources

CANDy: Automated analysis of domain architectures in carbohydrate-active enzymes.

PLoS ONE
Carbohydrate-active enzymes (CAZymes) can be found in all domains of life and play a crucial role in metabolic and physiological processes. CAZymes often possess a modular structure, comprising not only catalytic domains but also associated domains such ...
Alex Windels, Jorick Franceus, Jürgen Pleiss, Tom Desmet   +3 more
doaj   +4 more sources

Characterization of a novel multidomain CE15-GH8 enzyme encoded by a polysaccharide utilization locus in the human gut bacterium Bacteroides eggerthii

Scientific Reports, 2021
Bacteroidetes are efficient degraders of complex carbohydrates, much thanks to their use of polysaccharide utilization loci (PULs). An integral part of PULs are highly specialized carbohydrate-active enzymes, sometimes composed of multiple linked domains
Cathleen Kmezik, Daniel Krska, Scott Mazurkewich, Johan Larsbrink   +3 more
doaj   +1 more source

Redirecting substrate regioselectivity using engineered ΔN123-GBD-CD2 branching sucrases for the production of pentasaccharide repeating units of S. flexneri 3a, 4a and 4b haptens

Scientific Reports, 2021
The (chemo-)enzymatic synthesis of oligosaccharides has been hampered by the lack of appropriate enzymatic tools with requisite regio- and stereo-specificities.
Mounir Benkoulouche, Akli Ben Imeddourene, Louis-Antoine Barel, Guillaume Le Heiget, Sandra Pizzut, Hanna Kulyk, Floriant Bellvert, Sophie Bozonnet, Laurence A. Mulard, Magali Remaud-Siméon, Claire Moulis, Isabelle André   +11 more
doaj   +1 more source

Arabinogalactan proteins: focus on carbohydrate active enzymes [PDF]

Frontiers in Plant Science, 2014
Arabinogalactan proteins (AGPs) are a highly diverse class of cell surface proteoglycans that are commonly found in most plant species. AGPs play important roles in many cellular processes during plant development, such as reproduction, cell proliferation, pattern formation and growth, and in plant-microbe interaction.
Eva eKnoch, Adiphol eDilokpimol, Adiphol eDilokpimol, Naomi eGeshi   +3 more
openaire   +6 more sources