Results 21 to 30 of about 219,419 (292)

PlantCAZyme: a database for plant carbohydrate-active enzymes [PDF]

Database, 2014
PlantCAZyme is a database built upon dbCAN (database for automated carbohydrate active enzyme annotation), aiming to provide pre-computed sequence and annotation data of carbohydrate active enzymes (CAZymes) to plant carbohydrate and bioenergy research communities.
Alexander Ekstrom, Rahil Taujale, Nathan McGinn, Yanbin Yin   +3 more
openaire   +3 more sources

The structure of the Escherichia coli phosphotransferase IIAmannitol reveals a novel fold with two conformations of the active site [PDF]

, 1998
Background: The bacterial phosphoenolpyruvate-dependent phosphotransferase system (PTS) catalyses the cellular uptake and subsequent phosphorylation of carbohydrates.
van Montfort, R.L M, Dijkstra, B.W., Dijkstra, Bauke W., Robillard, G.T., Kalk, Kor H., Kouwijzer, Milou L.C.E.,, Pijning, Tjaard, van Montfort, Rob LM, van Montfort, Robert, Montfort, Rob L.M. van,, Dijkstra, Bauke W.,, Robillard, George T.,, Kalk, Kor H, Pijning, T., Kouwijzer, Milou LCE, Hanqyi, I., Robillard, George T, Dijkstra, Bauke W, Kalk, K.H., Pijning, Tjaard,, Pijning, Tjaard; id_orcid, Kouwijzer, Marie, Kalk, Kor H.,, Hangyi, Ilona,, Robillard, George T., Hangyi, Ilona, Kouwijzer, M.L C E   +26 more
core   +1 more source

Metagenomic Insights into Effects of Thiamine Supplementation on Carbohydrate-Active Enzymes’ Profile in Dairy Cows Fed High-Concentrate Diets

Animals, 2020
As the co-enzyme of pyruvate formate-lyase under ruminal anaerobic condition, thiamine plays a critical role in carbohydrate metabolism in dairy cows.
Yiguang Zhao, Fuguang Xue, Dengke Hua, Yue Wang, Xiaohua Pan, Xuemei Nan, Fuyu Sun, Linshu Jiang, Benhai Xiong   +8 more
doaj   +1 more source

The carbohydrate-active enzymes database (CAZy) in 2013 [PDF]

Nucleic Acids Research, 2013
The Carbohydrate-Active Enzymes database (CAZy; http://www.cazy.org) provides online and continuously updated access to a sequence-based family classification linking the sequence to the specificity and 3D structure of the enzymes that assemble, modify and breakdown oligo- and polysaccharides.
Henrissat, Bernard, Lombard, Vincent, Drula, Elodie, Coutinho, Pedro, Ramulu, Hemalatha   +4 more
openaire   +4 more sources

Changes in the Metagenome-Encoded CAZymes of the Rumen Microbiome Are Linked to Feed-Induced Reductions in Methane Emission From Holstein Cows

Frontiers in Microbiology, 2022
Enteric methane (CH4) emission from cattle is strongly linked to the feeding regime and the rumen microbial community structure. Here, we report that feed-induced CH4-reducing effects correlate with specific alterations in the profile of the microbiome ...
Kristian Barrett, Lene Lange, Christian F. Børsting, Dana W. Olijhoek, Peter Lund, Anne S. Meyer   +5 more
doaj   +1 more source

Regulating Strategies for Producing Carbohydrate Active Enzymes by Filamentous Fungal Cell Factories

Frontiers in Bioengineering and Biotechnology, 2020
Filamentous fungi are important eukaryotic organisms crucial in substrate degradation and carbon cycle on the earth and have been harnessed as cell factories for the production of proteins and other high value-added products in recent decades.
Teng Zhang, Hu Liu, Bo Lv, Chun Li, Chun Li, Chun Li   +5 more
doaj   +1 more source

Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function

BMC Bioinformatics, 2017
Background Carbohydrate-active enzymes are found in all organisms and participate in key biological processes. These enzymes are classified in 274 families in the CAZy database but the sequence diversity within each family makes it a major task to ...
P. K. Busk, B. Pilgaard, M. J. Lezyk, A. S. Meyer, L. Lange   +4 more
doaj   +1 more source

Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion

Biotechnology for Biofuels, 2018
Background Lignocellulose is highly recalcitrant to enzymatic deconstruction, where the recalcitrance primarily results from chemical linkages between lignin and carbohydrates.
Jenny Arnling Bååth, Scott Mazurkewich, Rasmus Meland Knudsen, Jens-Christian Navarro Poulsen, Lisbeth Olsson, Leila Lo Leggio, Johan Larsbrink   +6 more
doaj   +1 more source

Metatranscriptomic analysis of colonic microbiota’s functional response to different dietary fibers in growing pigs

Animal Microbiome, 2021
Background Dietary fibers are widely considered to be beneficial to health as they produce nutrients through gut microbial fermentation while facilitating weight management and boosting gut health.
Jie Xu, Rongying Xu, Menglan Jia, Yong Su, Weiyun Zhu   +4 more
doaj   +1 more source

Genome and Secretome Analysis of Staphylotrichum longicolleum DSM105789 Cultured on Agro-Residual and Chitinous Biomass

Microorganisms, 2021
Staphylotrichum longicolleum FW57 (DSM105789) is a prolific chitinolytic fungus isolated from wood, with a chitinase activity of 0.11 ± 0.01 U/mg. We selected this strain for genome sequencing and annotation, and compiled its growth characteristics on ...
Arslan Ali, Bernhard Ellinger, Sophie C. Brandt, Christian Betzel, Martin Rühl, Carsten Wrenger, Hartmut Schlüter, Wilhelm Schäfer, Hévila Brognaro, Martin Gand   +9 more
doaj   +1 more source