Results 1 to 10 of about 10,832 (224)

Gut microbial CAZymes markers for depression

Translational Psychiatry, 2023
Major depressive disorder (MDD) is a serious mental illness, characterized by disturbances of gut microbiome, it is required to further explore how the carbohydrate-active enzymes (CAZymes) were changed in MDD.
Xingyu Zhou, Yifan Li, Hanping Zhang
exaly   +4 more sources

Rhizospheric glycosyltransferase repertoires as a resource for enabling sustainable bioprocessing and green biocatalyst discovery [PDF]

Scientific Reports
The rhizospheric microbiomes associated with wild plant species Moringa oleifera and Abutilon fruticosum, endemic to the arid northwestern Mecca region of Saudi Arabia, represent untapped reservoirs of genetic capability with significant implications for
Rewaa S. Jalal, Fatimah M. Alshehrei
doaj   +2 more sources

Identification of Allobaculum mucolyticum as a novel human intestinal mucin degrader

Gut Microbes, 2021
The human gut microbiota plays a central role in intestinal health and disease. Yet, many of its bacterial constituents are functionally still largely unexplored.
Guus H. van Muijlwijk, Guido van Mierlo, Pascal W.T.C. Jansen, Michiel Vermeulen, Nancy M.C. Bleumink-Pluym, Noah W. Palm, Jos P.M. van Putten, Marcel R. de Zoete   +7 more
doaj   +1 more source

In Silico Predictions of Ecological Plasticity Mediated by Protein Family Expansions in Early-Diverging Fungi

Journal of Fungi, 2022
Early-diverging fungi (EDF) are ubiquitous and versatile. Their diversity is reflected in their genome sizes and complexity. For instance, multiple protein families have been reported to expand or disappear either in particular genomes or even whole ...
Małgorzata Orłowska, Anna Muszewska
doaj   +1 more source

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. [PDF]

, 2020
Anaerobic fungi (Neocallimastigomycota) are emerging non-model hosts for biotechnology due to their wealth of biomass-degrading enzymes, yet tools to engineer these fungi have not yet been established.
Albà, Arazoe, Atasoglu, Bach, Beckham, Bezanson, Birdsell, Boch, Bonugli-Santos, Brownlee, Calkins, Camacho, Camiolo, Carlson, Chan, Chen, Cheng, Cheng, Chokhawala, Coker, Deshpande, Diener, Dollhofer, Duarte, Durand, Duret, Fondon, Galtier, Gasiunas, Gentzsch, Gerngross, Glass, Glémin, Greene, Grigoriev, Haitjema, Haitjema, Hamilton, Hanafy, Hartfield, Henske, Hershberg, Hildebrand, Hull, Jiang, Karlin, Kiktev, Kleinstiver, Kleinstiver, Knauer, Knight, Kuyper, Leberer, Li, Liggenstoffer, Liu, Magee, Mertens, Meunier, Morrison, Murphy, Nicholson, Nieuwenhuis, Nørholm, Orpin, Oyola, O’Malley, Podolsky, Raymond, Reichenberger, Ropars, Sadhu, Sammond, Sekowska, Seppälä, Seppälä, Solieri, Solomon, Sonan, Staben, Steensels, Steensels, Sukumaran, Theodorou, UniProt: a worldwide hub of protein knowledge, Videvall, Wang, Wang, Wright, Wu, Ximenes, Youssef, Zetsche   +92 more
core   +1 more source

Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map

Journal of Fungi, 2020
Auricularia heimuer is one of the most popular edible fungi in China. In this study, the whole genome of A. heimuer was sequenced on the Illumina HiSeq X system and compared with other mushrooms genomes.
Ming Fang, Xiaoe Wang, Ying Chen, Peng Wang, Lixin Lu, Jia Lu, Fangjie Yao, Youmin Zhang   +7 more
doaj   +1 more source

Draft Genome Assembly of Floccularia luteovirens, an Edible and Symbiotic Mushroom on Qinghai-Tibet Plateau

G3: Genes, Genomes, Genetics, 2020
Floccularia luteovirens, also known as “Yellow mushroom”, is an edible ectomycorrhizal fungus widely distributed in the Qinghai-Tibet Plateau alpine meadow. So far, little genomic information is known about F.
Xiaolong Gan, Dong Cao, Zhenyu Zhang, Shu Cheng, Le Wei, Shiming Li, Baolong Liu   +6 more
doaj   +1 more source

Cellulolytic bacteria in the large intestine of mammals

Gut Microbes, 2022
The utilization of dietary cellulose by resident bacteria in the large intestine of mammals, both herbivores and omnivores (including humans), has been a subject of interest since the nineteenth century. Cellulolytic bacteria are key participants in this
Alicia Froidurot, Véronique Julliand
doaj   +1 more source

At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions. [PDF]

, 2020
As members of the plant microbiota, arbuscular mycorrhizal fungi (AMF, Glomeromycotina) symbiotically colonize plant roots. AMF also possess their own microbiota, hosting some uncultivable endobacteria.
Amselem, Joëlle, Bonfante, Paola, Ghignone, Stefano, Grigoriev, Igor V, Henrissat, Bernard, Lipzen, Anna, Martin, Francis M, Morin, Emmanuelle, Novero, Mara, Salvioli di Fossalunga, Alessandra, Sędzielewska Toro, Kinga, Venice, Francesco, Xianan, Xie   +12 more
core   +3 more sources

A pipeline for targeted metagenomics of environmental bacteria. [PDF]

, 2020
BackgroundMetagenomics and single cell genomics provide a window into the genetic repertoire of yet uncultivated microorganisms, but both methods are usually taxonomically untargeted.
Bowers, Robert M, Fuchs, Bernhard M, Goudeau, Danielle, Grieb, Anissa, Lee, Janey, Malmstrom, Rex R, Oggerin, Monike, Woyke, Tanja   +7 more
core   +2 more sources