Results 21 to 30 of about 12,625 (251)
cazy_webscraper: local compilation and interrogation of comprehensive CAZyme datasets
Microbial Genomics, 2022 Carbohydrate active enzymes (CAZymes) are pivotal in biological processes including energy metabolism, cell structure maintenance, signalling, and pathogen recognition. Bioinformatic prediction and mining of CAZymes improves our understanding of these activities and enables discovery of candidates of interest for industrial ...
Emma E. M. Hobbs +2 more
openaire +5 more sources
Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map
Journal of Fungi, 2020 Auricularia heimuer is one of the most popular edible fungi in China. In this study, the whole genome of A. heimuer was sequenced on the Illumina HiSeq X system and compared with other mushrooms genomes.
Ming Fang +7 more
doaj +1 more source
Journal of Fungi, 2022 Early-diverging fungi (EDF) are ubiquitous and versatile. Their diversity is reflected in their genome sizes and complexity. For instance, multiple protein families have been reported to expand or disappear either in particular genomes or even whole ...
Małgorzata Orłowska, Anna Muszewska
doaj +1 more source
G3: Genes, Genomes, Genetics, 2020 Floccularia luteovirens, also known as “Yellow mushroom”, is an edible ectomycorrhizal fungus widely distributed in the Qinghai-Tibet Plateau alpine meadow. So far, little genomic information is known about F.
Xiaolong Gan +6 more
doaj +1 more source
Cellulolytic bacteria in the large intestine of mammals
Gut Microbes, 2022 The utilization of dietary cellulose by resident bacteria in the large intestine of mammals, both herbivores and omnivores (including humans), has been a subject of interest since the nineteenth century. Cellulolytic bacteria are key participants in this
Alicia Froidurot, Véronique Julliand
doaj +1 more source
At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions. [PDF]
, 2020 As members of the plant microbiota, arbuscular mycorrhizal fungi (AMF, Glomeromycotina) symbiotically colonize plant roots. AMF also possess their own microbiota, hosting some uncultivable endobacteria.
Amselem, Joëlle +12 more
core +3 more sources
iCAZyGFADB: an insect CAZyme and gene function annotation database
Database, 2023 Abstract With the continuous upgrading of high-throughput sequencing technology, a large amount of biological genome data has been deciphered and published. The research on functional genes of biological genomes urgently needs a collection of service websites with user-friendly and full annotation functions for a variety of gene function
Chun Fu, YaoJun Yang
openaire +2 more sources
Rumen cellulosomics : divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains [PDF]
, 2014 Peer reviewedPublisher ...
Bayer, Edward A +12 more
core +8 more sources
Mycobiology, 2020 The carbohydrate-active enzyme (CAZyme) genes of Trametes contribute to polysaccharide degradation. However, the comprehensive analysis of the composition of CAZymes and the biosynthetic gene clusters (BGCs) of Trametes remain unclear. Here, we conducted
Yan Zhang +7 more
doaj +1 more source
Applied and Environmental Microbiology, 2023 Many studies have been done to understand the mechanisms underlying the degradation of plant cell walls of dead trees by wood decay fungi. However, little is known about how some of these fungi weaken living trees as pathogens. P. fraxinea belongs to the
Ruy Matsumoto +5 more
semanticscholar +1 more source