Biomolecules, 2019 : Dickeya sp., a plant pathogen, causing soft rot with strong pectin degradation capacity was taken for the comprehensive analysis of its corresponding biomass degradative system, which has not been analyzed yet.
Ying-Jie Yang +8 more
doaj +1 more source
Determination of Gene-Level Fitness Contributions Across the Mucin-Utilization Network of Bacteroides thetaiotaomicron. [PDF]
Adv Sci (Weinh)Genome‐wide CRISPRi and RNA‐seq resolve how B. thetaiotaomicron converts host mucosal glycans into fitness. The study reveals a layered mucin‐utilization architecture in which capsular polysaccharides constrain surface access, extracellular CAZymes and peptidases show functional redundancy, and intracellular catabolic pathways create discrete metabolic
Kim K +5 more
europepmc +2 more sources
Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates [PDF]
Microbial Cell Factories, 2012 Trichoderma reesei is a soft rot Ascomycota fungus utilised for industrial production of secreted enzymes, especially lignocellulose degrading enzymes. About 30 carbohydrate active enzymes (CAZymes) of T. reesei have been biochemically characterised.
Häkkinen Mari +6 more
openaire +5 more sources
Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression. [PDF]
PLoS Biology, 2016 The evolution of cellulose degradation was a defining event in the history of life. Without efficient decomposition and recycling, dead plant biomass would quickly accumulate and become inaccessible to terrestrial food webs and the global carbon cycle ...
Adam J Book +9 more
doaj +1 more source
Mycology, 2018 We have conducted a genome-level comparative study of basidiomycetes wood-rotting fungi (white, brown and soft rot) to understand the total plant biomass (lignin, cellulose, hemicellulose and pectin) -degrading abilities.
Ayyappa Kumar Sista Kameshwar +1 more
doaj +1 more source
A phylogenetic view and functional annotation of the animal β1,3-glycosyltransferases of the GT31 CAZy family [PDF]
Glycobiology, 2020 AbstractThe formation of β1,3-linkages on animal glycoconjugates is catalyzed by a subset of β1,3-glycosyltransferases grouped in the Carbohydrate-Active enZYmes family glycosyltransferase-31 (GT31). This family represents an extremely diverse set of β1,3-N-acetylglucosaminyltransferases [B3GNTs and Fringe β1,3-N-acetylglucosaminyltransferases], β1,3-N-
Petit, Daniel +2 more
openaire +5 more sources
Biotechnology for Biofuels, 2018 Background Lignocellulose is one of the most abundant forms of fixed carbon in the biosphere. Current industrial approaches to the degradation of lignocellulose employ enzyme mixtures, usually from a single fungal species, which are only effective in ...
Anna M. Alessi +11 more
doaj +1 more source
Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses. [PDF]
PLoS ONE, 2018 Ganoderma lucidum is a medicinal mushroom that is well known for its ability to enhance human health, and products made from this fungus have been highly profitable. The substrate-degrading ability of G. lucidum could be related to its growth.
Shuai Zhou +5 more
doaj +1 more source
Detection of carbohydrate-active enzymes and genes in a spent engine oil-perturbed agricultural soil
Bulletin of the National Research Centre, 2018 Background The purpose of this study is to decipher the diverse carbohydrate metabolism pathways in a spent engine oil-perturbed agricultural soil, enunciate the carbohydrate-active enzymes and genes involved in the process, taxonomically classify the ...
Lateef Babatunde Salam
doaj +1 more source
A holistic approach to understanding CAZy families through reductionist methods [Elektronisk resurs]
, 2009 In a time when the amount of biological data present in the public domain is becoming increasingly vast, the need for good classification systems has never been greater.
Nygren, Per-Åke +3 more
core +9 more sources