Results 11 to 20 of about 4,643 (177)

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger [PDF]

BMC Genomics, 2017
Background The Aspergillus niger genome contains a large repertoire of genes encoding carbohydrate active enzymes (CAZymes) that are targeted to plant polysaccharide degradation enabling A. niger to grow on a wide range of plant biomass substrates. Which
Birgit S. Gruben, Miia R. Mäkelä, Joanna E. Kowalczyk, Miaomiao Zhou, Isabelle Benoit-Gelber, Ronald P. De Vries   +5 more
doaj   +5 more sources

CAMEO: a CAZyme mapping engine optimized for HUMAnN. [PDF]

Microbiol Resour Announc
ABSTRACT There are technical barriers to creating functional mapping databases and a dearth of validated databases that can be easily implemented by users. We present CAMEO, a precomputed and validated mapping file for carbohydrate-active enzymes, as well as an approach to building new CAZyme ...
Bolino MJ, Frese SA.
europepmc   +2 more sources

Gut microbial CAZymes markers for depression

Translational Psychiatry, 2023
Abstract Major depressive disorder (MDD) is a serious mental illness, characterized by disturbances of gut microbiome, it is required to further explore how the carbohydrate-active enzymes (CAZymes) were changed in MDD. Here, using the metagenomic data from patients with MDD ( n
Peijun Xie, Xingyu Zhou, Yifan Li, Jing Wu, Hanping Zhang, Yu Huang, Xunmin Tan, Lu Wen, Oluwatayo Israel Olasunkanmi, Jingjing Zhou, Zuoli Sun, Min Liu, Guofu Zhang, Ying Wang, Peng Xie, Jian Yang, Peng Zheng   +16 more
openaire   +3 more sources

Strategies Shaping the Transcription of Carbohydrate-Active Enzyme Genes in Aspergillus nidulans

Journal of Fungi, 2022
Understanding the coordinated regulation of the hundreds of carbohydrate-active enzyme (CAZyme) genes occurring in the genomes of fungi has great practical importance.
Barnabás Cs. Gila, Károly Antal, Zsuzsanna Birkó, Judit Sz. Keserű, István Pócsi, Tamás Emri   +5 more
doaj   +1 more source

Influence of Feeding Weaned Piglets with Laminaria digitata on the Quality and Nutritional Value of Meat

Foods, 2022
Laminaria digitata is a novel feedstuff that can be used in pig diets to replace conventional feedstuffs. However, its resilient cell wall can prevent the monogastric digestive system from accessing intracellular nutrients.
David Miguel Ribeiro, Cristina M. Alfaia, José M. Pestana, Daniela F. P. Carvalho, Mónica Costa, Cátia F. Martins, José P. C. Lemos, Miguel Mourato, Sandra Gueifão, Inês Delgado, Patrícia Carvalho, Diogo Coelho, Inês Coelho, João P. B. Freire, André M. Almeida, José A. M. Prates   +15 more
doaj   +1 more source

Biocatalytic potential of Pseudolycoriella CAZymes (Sciaroidea, Diptera) in degrading plant and fungal cell wall polysaccharides

iScience, 2023
Summary: Soil biota has a crucial impact on soil ecology, global climate changes, and effective crop management and studying the diverse ecological roles of dipteran larvae deepens the understanding of soil food webs.
Vitor Trinca, Sibeli Carli, João Vitor Cardoso Uliana, Carolina Victal Garbelotti, Mariana Mendes da Silva, Vitor Kunes, Luana Parras Meleiro, Guilherme Thomaz Pereira Brancini, Frank Menzel, Luiz Paulo Moura Andrioli, Tatiana Teixeira Torres, Richard John Ward, Nadia Monesi   +12 more
doaj   +1 more source

In silicomodelling of the function of disease-related CAZymes

Essays in Biochemistry, 2023
AbstractIn silico modelling of proteins comprises a diversity of computational tools aimed to obtain structural, electronic, and/or dynamic information about these biomolecules, capturing mechanistic details that are challenging to experimental approaches, such as elusive enzyme-substrate complexes, short-lived intermediates, and reaction transition ...
Nin-Hill, Alba, Piniello, Beatriz, Rovira, Carme   +2 more
openaire   +4 more sources

cazy_webscraper: local compilation and interrogation of comprehensive CAZyme datasets

Microbial Genomics, 2022
Carbohydrate active enzymes (CAZymes) are pivotal in biological processes including energy metabolism, cell structure maintenance, signalling, and pathogen recognition. Bioinformatic prediction and mining of CAZymes improves our understanding of these activities and enables discovery of candidates of interest for industrial ...
Emma E. M. Hobbs, Tracey M. Gloster, Leighton Pritchard   +2 more
openaire   +7 more sources

CAZymes from the thermophilic fungus Thermoascus aurantiacus are induced by C5 and C6 sugars

Biotechnology for Biofuels, 2021
Background Filamentous fungi are excellent lignocellulose degraders, which they achieve through producing carbohydrate active enzymes (CAZymes). CAZyme production is highly orchestrated and gene expression analysis has greatly expanded understanding of ...
Raphael Gabriel, Rebecca Mueller, Lena Floerl, Cynthia Hopson, Simon Harth, Timo Schuerg, Andre Fleissner, Steven W. Singer   +7 more
doaj   +1 more source

Analysis of fungal high-mannose structures using CAZymes

Glycobiology, 2021
Abstract Glycoengineering ultimately allows control over glycosylation patterns to generate new glycoprotein variants with desired properties. A common challenge is glycan heterogeneity, which may affect protein function and limit the use of key techniques such as mass spectrometry. Moreover, heterologous protein expression can introduce
Bartłomiej M Kołaczkowski, Christian I Jørgensen, Nikolaj Spodsberg, Mary A Stringer, Nitin T Supekar, Parastoo Azadi, Peter Westh, Kristian B R M Krogh, Kenneth Jensen   +8 more
openaire   +3 more sources