Results 11 to 20 of about 6,460 (220)

Genome-Wide Comparison of Carbohydrate-Active Enzymes (CAZymes) Repertoire of Flammulina ononidis [PDF]

Mycobiology, 2018
Whole-genome sequencing of Flammulina ononidis, a wood-rotting basidiomycete, was performed to identify genes associated with carbohydrate-active enzymes (CAZymes). A total of 12,586 gene structures with an average length of 2009 bp were predicted by the
Young-Jin Park, Won-Sik Kong
doaj   +3 more sources

High activity CAZyme cassette for improving biomass degradation in thermophiles [PDF]

Biotechnology for Biofuels, 2018
Background Thermophilic microorganisms and their enzymes offer several advantages for industrial application over their mesophilic counterparts. For example, a hyperthermophilic anaerobe, Caldicellulosiruptor bescii, was recently isolated from hot ...
Roman Brunecky, Daehwan Chung, Nicholas S. Sarai, Neal Hengge, Jordan F. Russell, Jenna Young, Ashutosh Mittal, Patthra Pason, Todd Vander Wall, William Michener, Todd Shollenberger, Janet Westpheling, Michael E. Himmel, Yannick J. Bomble   +13 more
doaj   +3 more sources

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger [PDF]

BMC Genomics, 2017
Background The Aspergillus niger genome contains a large repertoire of genes encoding carbohydrate active enzymes (CAZymes) that are targeted to plant polysaccharide degradation enabling A. niger to grow on a wide range of plant biomass substrates. Which
Birgit S. Gruben, Miia R. Mäkelä, Joanna E. Kowalczyk, Miaomiao Zhou, Isabelle Benoit-Gelber, Ronald P. De Vries   +5 more
doaj   +5 more sources

CAZyme from gut microbiome for efficient lignocellulose degradation and biofuel production

Frontiers in Chemical Engineering, 2022
Over-exploitation and energy security concerns of the diminishing fossil fuels is a challenge to the present global economy. Further, the negative impact of greenhouse gases released using conventional fuels has led to the need for searching for ...
Dixita Chettri, Susmita Nad, Ujjal Konar, Anil Kumar Verma   +3 more
doaj   +2 more sources

Gut microbial CAZymes markers for depression

Translational Psychiatry, 2023
Abstract Major depressive disorder (MDD) is a serious mental illness, characterized by disturbances of gut microbiome, it is required to further explore how the carbohydrate-active enzymes (CAZymes) were changed in MDD. Here, using the metagenomic data from patients with MDD ( n
Peijun Xie, Xingyu Zhou, Yifan Li, Jing Wu, Hanping Zhang, Yu Huang, Xunmin Tan, Lu Wen, Oluwatayo Israel Olasunkanmi, Jingjing Zhou, Zuoli Sun, Min Liu, Guofu Zhang, Ying Wang, Peng Xie, Jian Yang, Peng Zheng   +16 more
openaire   +3 more sources

Analysis of fungal high-mannose structures using CAZymes

Glycobiology, 2021
Abstract Glycoengineering ultimately allows control over glycosylation patterns to generate new glycoprotein variants with desired properties. A common challenge is glycan heterogeneity, which may affect protein function and limit the use of key techniques such as mass spectrometry. Moreover, heterologous protein expression can introduce
Bartłomiej M Kołaczkowski, Christian I Jørgensen, Nikolaj Spodsberg, Mary A Stringer, Nitin T Supekar, Parastoo Azadi, Peter Westh, Kristian B R M Krogh, Kenneth Jensen   +8 more
openaire   +3 more sources

cazy_webscraper: local compilation and interrogation of comprehensive CAZyme datasets

Microbial Genomics, 2022
Carbohydrate active enzymes (CAZymes) are pivotal in biological processes including energy metabolism, cell structure maintenance, signalling, and pathogen recognition. Bioinformatic prediction and mining of CAZymes improves our understanding of these activities and enables discovery of candidates of interest for industrial ...
Emma E. M. Hobbs, Tracey M. Gloster, Leighton Pritchard   +2 more
openaire   +5 more sources

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. [PDF]

, 2020
Anaerobic fungi (Neocallimastigomycota) are emerging non-model hosts for biotechnology due to their wealth of biomass-degrading enzymes, yet tools to engineer these fungi have not yet been established.
Albà, Arazoe, Atasoglu, Bach, Beckham, Bezanson, Birdsell, Boch, Bonugli-Santos, Brownlee, Calkins, Camacho, Camiolo, Carlson, Chan, Chen, Cheng, Cheng, Chokhawala, Coker, Deshpande, Diener, Dollhofer, Duarte, Durand, Duret, Fondon, Galtier, Gasiunas, Gentzsch, Gerngross, Glass, Glémin, Greene, Grigoriev, Haitjema, Haitjema, Hamilton, Hanafy, Hartfield, Henske, Hershberg, Hildebrand, Hull, Jiang, Karlin, Kiktev, Kleinstiver, Kleinstiver, Knauer, Knight, Kuyper, Leberer, Li, Liggenstoffer, Liu, Magee, Mertens, Meunier, Morrison, Murphy, Nicholson, Nieuwenhuis, Nørholm, Orpin, Oyola, O’Malley, Podolsky, Raymond, Reichenberger, Ropars, Sadhu, Sammond, Sekowska, Seppälä, Seppälä, Solieri, Solomon, Sonan, Staben, Steensels, Steensels, Sukumaran, Theodorou, UniProt: a worldwide hub of protein knowledge, Videvall, Wang, Wang, Wright, Wu, Ximenes, Youssef, Zetsche   +92 more
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Biocatalytic potential of Pseudolycoriella CAZymes (Sciaroidea, Diptera) in degrading plant and fungal cell wall polysaccharides

iScience, 2023
Summary: Soil biota has a crucial impact on soil ecology, global climate changes, and effective crop management and studying the diverse ecological roles of dipteran larvae deepens the understanding of soil food webs.
Vitor Trinca, Sibeli Carli, João Vitor Cardoso Uliana, Carolina Victal Garbelotti, Mariana Mendes da Silva, Vitor Kunes, Luana Parras Meleiro, Guilherme Thomaz Pereira Brancini, Frank Menzel, Luiz Paulo Moura Andrioli, Tatiana Teixeira Torres, Richard John Ward, Nadia Monesi   +12 more
doaj   +1 more source

Bioinformatic characterisation of genes encoding cell wall degrading enzymes in the Phytophthora parasitica genome [PDF]

, 2016
BACKGROUND A critical aspect of plant infection by the majority of pathogens is penetration of the plant cell wall. This process requires the production and secretion of a broad spectrum of pathogen enzymes that target and degrade the many complex ...
Blackman, Leila M., Cullerne, Darren, Hardham, Adrienne R.   +2 more
core   +2 more sources