Results 41 to 50 of about 5,020 (218)
Frontiers in Microbiology, 2020 The traditional classification of fungal and oomycete phytopathogens into three classes – biotrophs, hemibiotrophs, or necrotrophs – is unsustainable. This study highlights multiple phytopathogen species for which these labels have been inappropriately ...
James K. Hane +5 more
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dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates [PDF]
Nucleic Acids Research, 2020 Abstract PULs (polysaccharide utilization loci) are discrete gene clusters of CAZymes (Carbohydrate Active EnZymes) and other genes that work together to digest and utilize carbohydrate substrates. While PULs have been extensively characterized in Bacteroidetes, there exist PULs from other bacterial phyla, as well as archaea and ...
Catherine Ausland +7 more
openaire +2 more sources
dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes
Nucleic Acids Research, 2022 Abstract Carbohydrate Active EnZymes (CAZymes) are significantly important for microbial communities to thrive in carbohydrate rich environments such as animal guts, agricultural soils, forest floors, and ocean sediments. Since 2017, microbiome sequencing and assembly have produced numerous metagenome assembled genomes (MAGs).
Jinfang Zheng +8 more
openaire +2 more sources
, 2020 a) The differences in the relative abundance of CAZymes in human gut in Indian regions. b) Shannon diversity indices of the CAZyme abundance in different regions of India.
Kamaldeep Kaur (8690259) +4 more
core +1 more source
Phylum specific signatures of CAZyme family abundances.
, 2015 Heatmap of relative percentage abundance of the different digestive CAZyme families across top contributing phyla. The marker CAZyme families identified significantly abundant in the CAZotype-1, CAZotype-2 and CAZotype-3 are highlighted in Blue, Orange ...
Tanudeep Bhattacharya (555457) +2 more
core +1 more source
CAZyme genes in Tricholoma matsutake and 37 Agaricomycetes.
, 2020 All available CAZyme modules were counted. Scaled values based on row Z-scores were used to fill each cell.
Julius Park (8357166) +6 more
core +1 more source
Frontiers in Marine ScienceThe complete metabolism of carbohydrates, as the most abundant and structurally diverse organic matter on earth, requires the involvement of different carbohydrate-active enzymes (CAZymes).
Kuo-Jian Ma +11 more
doaj +1 more source
Comparison of detected CAZyme genes between and within samples.
, 2013 The numbers of unique and shared CAZyme genes between samples are represented as a Venn diagram. The phylum distribution of the core CAZyme genes of each group are shown in different colors (blue, Firmicutes; red, Bacteroidetes; yellow, Actinobacteria ...
Fabrice Armougom (19421) +6 more
core +1 more source
Variation of CAZyme abundances with BMI.
, 2015 (a) Correlation of BMI with summed abundances of all gut-associated CAZymes (b) Correlation of BMI with summed abundances of the 10 CAZyme families showing significant positive correlation with BMI.
Tanudeep Bhattacharya (555457) +2 more
core +1 more source
Genome-Wide Comparison of Carbohydrate-Active Enzymes (CAZymes) Repertoire of Flammulina ononidis
Mycobiology, 2018 Whole-genome sequencing of Flammulina ononidis, a wood-rotting basidiomycete, was performed to identify genes associated with carbohydrate-active enzymes (CAZymes). A total of 12,586 gene structures with an average length of 2009 bp were predicted by the
Young-Jin Park, Won-Sik Kong
doaj +1 more source