Results 41 to 50 of about 6,460 (220)

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes [PDF]

, 2016
available in PMC 2016 November 07The fungal kingdom is the source of almost all industrial enzymes in use for lignocellulose bioprocessing. We developed a systems-level approach that integrates transcriptomic sequencing, proteomics, phenotype, and ...
Borges-Rivera, Diego Ramon, Brewer, Heather M., Gilmore, Sean P., Grigoriev, Igor V., Haitjema, Charles H., Henske, John K., Lipzen, Anna, O'Malley, Michelle A., Purvine, Samuel O., Regev, Aviv, Solomon, Kevin V., Theodorou, Michael K., Thompson, Dawn A., Wright, Aaron T.   +13 more
core   +2 more sources

Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass. [PDF]

, 2019
BackgroundTrichoderma reesei is one of the major producers of enzymes for the conversion of plant biomass to sustainable fuels and chemicals. Crude plant biomass can induce the production of CAZymes in T. reesei, but there is limited understanding of how
Aguilar-Pontes, Maria Victoria, Benocci, Tiziano, Daly, Paul, de Vries, Ronald P, Grigoriev, Igor V, Kun, Roland Sándor, Lail, Kathleen, Lipzen, Anna, Lubbers, Ronnie JM, Ng, Vivian, Seiboth, Bernhard, Wang, Mei   +11 more
core   +8 more sources

Transcriptome Profile of Trichoderma harzianum IOC-3844 Induced by Sugarcane Bagasse [PDF]

, 2014
Profiling the transcriptome that underlies biomass degradation by the fungus Trichoderma harzianum allows the identification of gene sequences with potential application in enzymatic hydrolysis processing.
Crivelente Horta, Maria Augusta, Crucello, Aline, Cruz Pradella, Jose Geraldo da, Delabona, Priscila da Silva, Freitas, Sindelia, Kuroshu, Reginaldo Massanobu, Laborda, Prianda, Polikarpov, Igor, Souza, Anete Pereira, Vicentini, Renato   +9 more
core   +1 more source

Evolutionary relationships among bifidobacteria and their hosts and environments. [PDF]

, 2020
BACKGROUND:The assembly of animal microbiomes is influenced by multiple environmental factors and host genetics, although the relative importance of these factors remains unclear.
Martiny, Jennifer BH, Rodriguez, Cynthia I   +1 more
core  

Community transcriptomics reveals drainage effects on paddy soil microbiome across the three domains of life [PDF]

, 2018
Methan ist ein potentes Treibhausgas, das erheblich zum Klimawandel beiträgt. Es wird biologisch ausschließlich durch methanogene Archaeen produziert, welche in anoxischen Böden weit verbreitet sind. Ein Beispiel ist der Nassreisanbau. Dieser trägt 10%
Abdallah, Rehab
core   +1 more source

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies [PDF]

, 2018
\ud \ud Background\ud Lignocellulose is one of the most abundant forms of fixed carbon in the biosphere. Current industrial approaches to the degradation of lignocellulose employ enzyme mixtures, usually from
A Klindworth, A Krogh, A Medina, Adam A. Dowle, AE Pérez-Cobas, AK Biswal, AL Pometto, AM Alessi, Anna M. Alessi, AS Johnson-Rollings, B Xiao, BL Mello, BL Mello, C Damon, C Quast, C Trapnell, C Wang, CA Rezende, CJ Newbold, CW Simmons, D Floudas, DA Neher, DH Huson, DJ Jiménez, DJ Jiménez, DJ Jiménez, EA Franzosa, Eduardo R. deAzevedo, EH Novotny, Etelvino H. Novotny, F Francocci, GR Lewin, H Nielsen, H Piao, H Teeling, H Wei, Igor Polikarpov, J Liang, J Ni, J. Peter W. Young, JA López-González, Joseph P. Bennett, K Hadziavdic, L Chen, L Cortes-Tolalpa, LF Martins, LP Antunes, LR Lynd, M Garber, M Lever, M Martín-Cereceda, M Saleem, MG Grabherr, N Ivanova, Neil C. Bruce, Nicola C. Oates, NP McNulty, OE Petrova, OU Mason, P Rice, R Sun, RH Wilson, RI Griffiths, RJ Ram, RL Johnson, S Heiss-Blanquet, S Wu, SA Eichorst, SC Goslee, Simon J. McQueen-Mason, ST Bates, Susannah M. Bird, T Schneider, V Gannes de, V Gannes de, V Lionetti, VS Varma, W Mhuantong, Y Ishihama, Y Xia, Y Yin, Yi Li   +81 more
core   +4 more sources

Polysaccharide metabolic pattern of Cytophagales and Flavobacteriales: a comprehensive genomics approach

Frontiers in Marine Science
The complete metabolism of carbohydrates, as the most abundant and structurally diverse organic matter on earth, requires the involvement of different carbohydrate-active enzymes (CAZymes).
Kuo-Jian Ma, Kuo-Jian Ma, Kuo-Jian Ma, Yong-Lian Ye, Yu-Kang Li, Yu-Kang Li, Ge-Yi Fu, Yue-Hong Wu, Cong Sun, Cong Sun, Xue-Wei Xu, Xue-Wei Xu   +11 more
doaj   +1 more source

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network. [PDF]

, 2019
BACKGROUND:Enzymatic plant biomass degradation by fungi is a highly complex process and one of the leading challenges in developing a biobased economy. Some industrial fungi (e.g.
Aguilar Pontes, Maria-Victoria, Battaglia, Evy, Bauer, Diane, Chroumpi, Tania, de Vries, Ronald P, Grigoriev, Igor V, He, Guifen, Khosravi, Claire, Kowalczyk, Joanna E, Lipzen, Anna, Ng, Vivian, Peng, Mao, Wiebenga, Ad   +12 more
core   +2 more sources

Carbohydrate-active enzymes from pigmented Bacilli: a genomic approach to assess carbohydrate utilization and degradation [PDF]

, 2011
Background Spore-forming Bacilli are Gram-positive bacteria commonly found in a variety of natural habitats, including soil, water and the gastro-intestinal (GI)-tract of animals. Isolates of various Bacillus species produce pigments, mostly carotenoids,
Nicola Manzo, Enrica D'Apuzzo, Pedro M Coutinho, Simon M Cutting, Bernard Henrissat, Ezio Ricca   +5 more
core   +1 more source

Complex carbohydrate utilization by the healthy human microbiome. [PDF]

PLoS ONE, 2012
The various ecological habitats in the human body provide microbes a wide array of nutrient sources and survival challenges. Advances in technology such as DNA sequencing have allowed a deeper perspective into the molecular function of the human ...
Brandi L Cantarel, Vincent Lombard, Bernard Henrissat   +2 more
doaj   +1 more source