Results 71 to 80 of about 5,020 (218)

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

Biotechnology for Biofuels, 2020
Background Understanding how fungi degrade lignocellulose is a cornerstone of improving renewables-based biotechnology, in particular for the production of hydrolytic enzymes. Considerable progress has been made in investigating fungal degradation during
Jolanda M. van Munster, Paul Daly, Martin J. Blythe, Roger Ibbett, Matt Kokolski, Sanyasi Gaddipati, Erika Lindquist, Vasanth R. Singan, Kerrie W. Barry, Anna Lipzen, Chew Yee Ngan, Christopher J. Petzold, Leanne Jade G. Chan, Mikko Arvas, Roxane Raulo, Steven T. Pullan, Stéphane Delmas, Igor V. Grigoriev, Gregory A. Tucker, Blake A. Simmons, David B. Archer   +20 more
doaj   +1 more source

Biocatalytic potential of basidiomycetes: Relevance, challenges and research interventions in industrial processes

Scientific African, 2021
Basidiomycetes are potential cell factories by their possession of genes that express a wide range of plant cell wall-degrading enzymes categorized in the Carbohydrate-active Enzymes (CAZyme) database.
Joseph A. Bentil
doaj   +1 more source

The 3D genome of Gigaspora margarita unveils stable chromatin and nucleolar organization and symbiont‐dependent genome dynamics

New Phytologist, EarlyView.
Summary Arbuscular mycorrhizal fungi (AMF) are widespread plant symbionts that enhance nutrient acquisition and influence ecosystem productivity. Previous chromosome‐level assemblies of the model species Rhizophagus irregularis revealed a two‐compartment genome architecture (active A and repressed B chromatin compartments), yet its conservation across ...
Ken Mugambi, Jordana Oliveira, Franco Magurno, Alessandra Salvioli di Fossalunga, Mara Novero, Luisa Lanfranco, Stefano Ghignone, Gökalp Yildirir, Yan Wang, Paola Bonfante, Nicolas Corradi   +10 more
wiley   +1 more source

Complete Genome Analysis of Subtercola sp. PAMC28395: Genomic Insights into Its Potential Role for Cold Adaptation and Biotechnological Applications

Microorganisms, 2023
This study reports the complete genome sequence of Subtercola sp. PAMC28395, a strain isolated from cryoconite in Uganda. This strain possesses several active carbohydrate-active enzyme (CAZyme) genes involved in glycogen and trehalose metabolism ...
Ryoichi Yamada, So-Ra Han, Hyun Park, Tae-Jin Oh   +3 more
doaj   +1 more source

Genomic and Transcriptomic Analyses Provide Insights Into Erysiphe necator Pathogenicity and Grapevine Response

Plant Biotechnology Journal, EarlyView.
ABSTRACT Grapevine powdery mildew, caused by the fungus Erysiphe necator, is one of the most prevalent obligate biotrophic pathogens in vineyards, posing a significant threat to grape production. Despite its impact, research on E. necator pathogenicity and grapevine responses remains limited.
Bo Mu, Ruixin Tang, Zhaolin Teng, Jinfu Chen, Kaicheng Cui, Feng Wei, Wenxiang Kong, Shunyuan Xiao, Xiangnan Xu, Jia‐Yue Feng, Ying‐Qiang Wen   +10 more
wiley   +1 more source

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation [PDF]

Nucleic Acids Research, 2017
Carbohydrate-active enzyme (CAZymes) are not only the most important enzymes for bioenergy and agricultural industries, but also very important for human health, in that human gut microbiota encode hundreds of CAZyme genes in their genomes for degrading various dietary and host carbohydrates.
Le Huang, Han Zhang 0017, Peizhi Wu, Sarah Entwistle, Xueqiong Li, Tanner Yohe, Haidong Yi, Zhenglu Yang, Yanbin Yin   +8 more
openaire   +2 more sources

Advancements in Mass Spectrometry‐Based Glycomics in Food and Nutritional Science

Mass Spectrometry Reviews, Volume 45, Issue 4, Page 829-850, July/August 2026.
ABSTRACT This review highlights advancements in mass spectrometry (MS)‐based glycomics in food and nutritional science. Carbohydrates, which are vital for human health, exhibit complex structures, making their analysis challenging. MS has become an indispensable tool for elucidating the structures of carbohydrates, including glycans, through soft ...
JaeHui Song, HyunJi Lee, Youngshik Choe, Hyeyoung Lee   +3 more
wiley   +1 more source

Linking Plant Metabolomics with Fungal Functional Dynamics Reveals a Noncanonical S‐R‐C Adaptive Trajectory

Advanced Science, Volume 13, Issue 31, 4 June 2026.
Using field‐based holo‐omics, we demonstrate that developmental shifts in sorghum leaf metabolomes drive a noncanonical fungal succession from stress tolerators (S) through ruderals (R) to competitors (C). Antifungal metabolites in young leaves select for S strategists with expanded genomes, transient maltose pulses during flowering favor fast‐growing ...
Peilin Chen, John W. Taylor, Cheng Gao
wiley   +1 more source

Development and Validation of a Microarray for the Investigation of the CAZymes Encoded by the Human Gut Microbiome

PLoS ONE, 2013
Distal gut bacteria play a pivotal role in the digestion of dietary polysaccharides by producing a large number of carbohydrate-active enzymes (CAZymes) that the host otherwise does not produce. We report here the design of a custom microarray that we used to spot non-redundant DNA probes for more than 6,500 genes encoding glycoside hydrolases and ...
Kaoutari, Abdessamad El, Armougom, Fabrice, Leroy, Quentin, Vialettes, Bernard, Million, Matthieu, Raoult, Didier, Henrissat, Bernard   +6 more
openaire   +8 more sources

Variation of contribution index (expressed as GINI coefficient) of CAZyme families in the human gut with age.

, 2015
The GINI coefficient, an indicator of functional rarefaction, varies as a logarithmic function with age. Adult individuals have a lower GINI coefficient, indicating more equal distribution of CAZyme families, but with progressively younger age, fewer ...
Tanudeep Bhattacharya (555457), Sharmila S. Mande (176619), Tarini Shankar Ghosh (194275)   +2 more
core   +1 more source