Results 71 to 80 of about 777,399 (277)
Splitting Reactions Preserves Nondegenerate Behaviors in Chemical Reaction Networks
SIAM Journal on Applied Mathematics, 2023 some minor calculational errors fixed in the ...
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Chemical Reaction Networks’ Programming for Solving Equations
Current Issues in Molecular Biology, 2022 The computational ability of the chemical reaction networks (CRNs) using DNA as the substrate has been verified previously. To solve more complex computational problems and perform the computational steps as expected, the practical design of the basic modules of calculation and the steps in the reactions have become the basic requirements for ...
Ziwei Shang, Changjun Zhou, Qiang Zhang
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Gut microbiome and aging—A dynamic interplay of microbes, metabolites, and the immune system
FEBS Letters, EarlyView.Age‐dependent shifts in microbial communities engender shifts in microbial metabolite profiles. These in turn drive shifts in barrier surface permeability of the gut and brain and induce immune activation. When paired with preexisting age‐related chronic inflammation this increases the risk of neuroinflammation and neurodegenerative diseases.
Aaron Mehl, Eran Blacher
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A Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-Networks. [PDF]
PLoS ONE, 2016 Modeling stochastic behavior of chemical reaction networks is an important endeavor in many aspects of chemistry and systems biology. The chemical master equation (CME) and the Gillespie algorithm (GA) are the two most fundamental approaches to such ...
Jaroslav Albert
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Asymptotic analysis of multiscale approximations to reaction networks
, 2006 A reaction network is a chemical system involving multiple reactions and chemical species. Stochastic models of such networks treat the system as a continuous time Markov chain on the number of molecules of each species with reactions as possible ...
Ball, Karen +3 more
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FEBS Letters, EarlyView.Biomolecular condensates formed by fused in sarcoma (FUS) are dissolved by high ATP concentrations yet persist in cells. Using a reconstituted system, we demonstrate that valosin‐containing protein (VCP), an AAA+ ATPase, counteracts ATP‐driven dissolution of FUS condensates through its D2 ATPase activity.
Hitomi Kimura +2 more
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Energetic Materials FrontiersNitroguanidine (NQ) plays a central role in aerospace and industrial fields, and a deep understanding of its dynamic behavior and reaction mechanisms is crucial for accurately predicting its combustion and explosive properties.
Ya-bei Xu, Yong-jin Wang, Dong-ping Chen
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Nature Communications, 2021 So far, only a few chemical oscillators based on organic reactions have been developed. Here, the authors report both autocatalytic and oscillatory reaction networks that form substituted guanidines from thiouronium salts; when coupled to cascade ...
Alexander I. Novichkov +5 more
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, 2005 The evolutionary origin of universal statistics in biochemical reaction network is studied, to explain the power-law distribution of reaction links and the power-law distributions of chemical abundances. Using cell models with catalytic reaction network,
Chikara Furusawa +3 more
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Absolutely robust controllers for chemical reaction networks
Journal of The Royal Society Interface, 2020 In this work, we design a type of controller that consists of adding a specific set of reactions to an existing mass-action chemical reaction network in order to control a target species. This set of reactions is effective for both deterministic and stochastic networks, in the latter case controlling the mean as well as the variance of the target ...
Jinsu Kim, German Enciso
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