Results 41 to 50 of about 666,094 (196)
Independent, Incidence Independent and Weakly Reversible Decompositions of Chemical Reaction Networks [PDF]
Match-communications in Mathematical and in Computer Chemistry, 2021 Chemical reaction networks (CRNs) are directed graphs with reactant or product complexes as vertices, and reactions as arcs. A CRN is weakly reversible if each of its connected components is strongly connected.
Bryan S. Hernandez +5 more
semanticscholar +1 more source
Programming and simulating chemical reaction networks on a surface. [PDF]
J R Soc Interface, 2020 Models of well-mixed chemical reaction networks (CRN) have provided a solid foundation for the study of programmable molecular systems, but the importance of spatial organization in such systems has increasingly been recognized. In this paper, we explore
Clamons S, Qian L, Winfree E.
europepmc +2 more sources
Out-of-Equilibrium Colloidal Assembly Driven by Chemical Reaction Networks. [PDF]
Langmuir, 2020 Transient assembled structures play an indispensable role in a wide variety of processes fundamental to living organisms including cellular transport, cell motility, and proliferation.
van Ravensteijn BGP +3 more
europepmc +2 more sources
Concordant chemical reaction networks [PDF]
Mathematical Biosciences, 2012 We describe a large class of chemical reaction networks, those endowed with a subtle structural property called concordance. We show that the class of concordant networks coincides precisely with the class of networks which, when taken with any weakly monotonic kinetics, invariably give rise to kinetic systems that are injective --- a quality that ...
Shinar, Guy, Feinberg, Martin
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Autonomous Soft Robots Empowered by Chemical Reaction Networks
Advances in Materials, 2022 Hydrogel actuators are important for designing stimuli‐sensitive soft robots. They generate mechanical motion by exploiting compartmentalized (de)swelling in response to a stimulus.
Giorgio Fusi +4 more
semanticscholar +1 more source
Monotone Chemical Reaction Networks [PDF]
Journal of Mathematical Chemistry, 2006 zbMATH Open Web Interface contents unavailable due to conflicting licenses.
P. DE LEENHEER, ANGELI, DAVID, E. SONTAG
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Siphons in Chemical Reaction Networks [PDF]
Bulletin of Mathematical Biology, 2010 Siphons in a chemical reaction system are subsets of the species that have the potential of being absent in a steady state. We present a characterization of minimal siphons in terms of primary decomposition of binomial ideals, we explore the underlying geometry, and we demonstrate the effective computation of siphons using computer algebra software ...
Shiu, Anne, Sturmfels, Bernd
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An ecological framework for the analysis of prebiotic chemical reaction networks. [PDF]
J Theor Biol, 2020 Peng Z, Plum AM, Gagrani P, Baum DA.
europepmc +3 more sources
DNA‐Based Chemical Reaction Networks for Biosensing Applications
Advanced Intelligent Systems, 2020 The nature of biosensing is a biochemical reaction. DNA‐based chemical reaction networks (DNA‐CRNs) as a powerful programming language for describing behaviors of chemical reactions have shown great potential in designs and applications of biosensors ...
Zhijun Li +6 more
doaj +1 more source
Nonequilibrium thermodynamics of non-ideal chemical reaction networks. [PDF]
Journal of Chemical Physics, 2020 All current formulations of nonequilibrium thermodynamics of open chemical reaction networks rely on the assumption of non-interacting species. We develop a general theory that accounts for interactions between chemical species within a mean-field ...
Francesco Avanzini +3 more
semanticscholar +1 more source