Results 71 to 80 of about 666,094 (196)
Composable computation in discrete chemical reaction networks [PDF]
Distributed computing, 2019 We study the composability of discrete chemical reaction networks (CRNs) that stably compute (i.e., with probability 0 of error) integer-valued functions f:Nd→N\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \
Eric E. Severson +2 more
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Frontiers in Systems Biology, 2023 Introduction: Chemical reaction networks (CRNs) are powerful tools for describing the complex nature of cancer’s onset, progression, and therapy. The main reason for their effectiveness is in the fact that these networks can be rather naturally encoded ...
Sara Sommariva +6 more
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Reaction networks as systems for resource allocation: a variational principle for their non-equilibrium steady states. [PDF]
PLoS ONE, 2012 Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system ...
Andrea De Martino +3 more
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IEEE Access, 2023 Disturbances are widespread in biochemical systems. Nowadays, prevalent single-loop control strategies only take external disturbances into account. However, internal perturbations that threaten the stability of biochemical systems are invariably ignored.
Huihui Xue +3 more
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Concordant chemical reaction networks and the Species-Reaction Graph [PDF]
Mathematical Biosciences, 2013 In a recent paper it was shown that, for chemical reaction networks possessing a subtle structural property called concordance, dynamical behavior of a very circumscribed (and largely stable) kind is enforced, so long as the kinetics lies within the very broad and natural weakly monotonic class.
Shinar, Guy, Feinberg, Martin
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Conservation laws and work fluctuation relations in chemical reaction networks. [PDF]
Journal of Chemical Physics, 2018 We formulate a nonequilibrium thermodynamic description for open chemical reaction networks (CRNs) described by a chemical master equation. The topological properties of the CRN and its conservation laws are shown to play a crucial role. They are used to
Riccardo Rao, M. Esposito
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Deterministic function computation with chemical reaction networks [PDF]
Natural Computing, 2012 fixed errors in previous ...
Chen, Ho-Lin +2 more
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Mechanism Deduction from Noisy Chemical Reaction Networks. [PDF]
Journal of Chemical Theory and Computation, 2018 We introduce KiNetX, a fully automated meta-algorithm for the kinetic analysis of complex chemical reaction networks derived from semiaccurate but efficient electronic structure calculations.
J. Proppe, M. Reiher
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Stability Analysis for a Class of Non-Weakly Reversible Chemical Reaction Networks
SICE Journal of Control, Measurement, and System Integration, 2018 We consider ordinary differential equations (ODEs) that describe the time evolution of the concentrations of species in chemical reaction networks (CRNs).
Hirokazu Komatsu, Hiroyuki Nakajima
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Mathematical Biosciences and Engineering, 2020 Protein phosphorylation cycles are important mechanisms of the post translational modification of a protein and as such an integral part of intracellular signaling and control. We consider the sequential phosphorylation and dephosphorylation of a protein
Carsten Conradi +2 more
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