Results 31 to 40 of about 595,755 (284)

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments. [PDF]

, 2011
Although several tools for the analysis of ChIP-seq data have been published recently, there is a growing demand, in particular in the plant research community, for computational resources with which such data can be processed, analyzed, stored ...
Muino, J.M., Marlous Hoogstraat, Dijk, A.D.J., van, Roeland C. H. J. van Ham, Ham, R.C.H.J., van, van Dijk, A.D.J., van Ham, R.C.H.J., Jose M. Muiño, Aalt D. J. van Dijk, Hoogstraat, M.   +9 more
core   +1 more source

Models incorporating chromatin modification data identify functionally important p53 binding sites [PDF]

, 2013
Genome-wide prediction of transcription factor binding sites is notoriously difficult. We have developed and applied a logistic regression approach for prediction of binding sites for the p53 transcription factor that incorporates sequence information ...
Barker, Daniel, Iggo, Richard Derek, Lim, Ji-Hyun   +2 more
core   +1 more source

Antibodies and conditions used for chromatin immunoprecipitation (ChIP).

, 2023
Antibodies and conditions used for chromatin immunoprecipitation (ChIP).
Karsten Hokamp (42210), Mohamed M. Alhussain (7864764), Michael Church (652126), Alastair B. Fleming (7864781), Mohamed M. Alhussain, Alastair B. Fleming, Brenda Lee, Karsten Hokamp, Atif A. Bamagoos (14619503), Atif A. Bamagoos, Brenda Lee (9922007), Michael Church   +11 more
core   +1 more source

Nuclear factor I genomic binding associates with chromatin boundaries [PDF]

, 2013
BACKGROUND: The Nuclear Factor I (NFI) family of DNA binding proteins (also called CCAAT box transcription factors or CTF) is involved in both DNA replication and gene expression regulation.
Armelle Gaussin, Schmid, Christoph D., Mermod, Nicolas, Jozef Adamcik, Ambrosini, Giovanna, Schmid, C. D., Pjanic, P., Giovanna Ambrosini, Plasari, Genta, Genta Plasari, Bucher, P., Adamcik, Jozef, Kerschgens, J., Christoph D Schmid, Petar Pjanic, Pjanic, Petar, Kerschgens, Jan, Ambrosini, G., Pjanic, Milos, Gaussin, Armelle, Gaussin, A., Pjanic, M., Philipp Bucher, Plasari, G., Jan Kerschgens, Adamcik, J., Giovani Dietler, Bucher, Philipp, Milos Pjanic, Dietler, Giovani, Dietler, G., Schmid, C.D., Nicolas Mermod, Mermod, N.   +33 more
core   +2 more sources

Oligonucleotide primers used for RTqPCR and chromatin immunoprecipitation (ChIP) assay.

, 2023
Oligonucleotide primers used for RTqPCR and chromatin immunoprecipitation (ChIP) assay.
Christopher J. Sifuentes (6892442), Samhitha Raj (16469680), Robert J. Denver (3291156), Yasuhiro Kyono (9747545)   +3 more
core   +1 more source

Chromatin structure can introduce systematic biases in genome-wide analyses of Plasmodium falciparum [version 2; peer review: 2 approved]

Open Research Europe, 2022
Background: The maintenance, regulation, and dynamics of heterochromatin in the human malaria parasite, Plasmodium falciparum, has drawn increasing attention due to its regulatory role in mutually exclusive virulence gene expression and the silencing of ...
Jessica Bryant, Sebastian Baumgarten
doaj   +1 more source

Profiling of promoter occupancy by PPARalpha in human hepatoma cells via ChIP-chip analysis [PDF]

, 2010
The transcription factor peroxisome proliferator-activated receptor alpha (PPARalpha) is an important regulator of hepatic lipid metabolism. While PPARalpha is known to activate transcription of numerous genes, no comprehensive picture of PPARalpha ...
Degenhardt, Tatjana, de Groot, Philip, Merja Heinäniemi, Väisänen, Sami, de Groot, P.J., Carlberg, Carsten, Carsten Carlberg, de Vries, Sacco C, Müller, M.R., David L. M. van der Meer, Vries, Sacco, de, Philip J. de Groot, van der Meer, D.L., Degenhardt, T., Kersten, Sander, de Vries, Sacco, Heinaniemi, M., Vries, S.C., de, Kersten, A.H., Müller, Michael, Carlberg, C., Meer, D.L., van der, Sander Kersten, Michael Müller, Meer, D.L.M., van der, Groot, Philip, de, de Vries, S.C., Väisänen, S., Sami Väisänen, van der Meer, David L M, Groot, P.J., de, Heinäniemi, Merja, van der Meer, D.L.M., de Groot, Philip J, Tatjana Degenhardt, Sacco C. de Vries   +35 more
core   +1 more source

Chromatin Immunoprecipitation (ChIP), Streptavidin and ATP-agarose Mediated Pull-down Analyses

Bio-Protocol, 2013
Epstein-Barr virus (EBV) nuclear antigen 2 (EBNA2) induces expression of both viral and cellular genes in virus infected B cells by mimicking activated Notch receptors (Notch-IC) that mediate transcription activation through binding to the repressing ...
Cheng-Der Liu, Ya-Lin Chen, Yi-Ly Min, Bo Zhao, Chi-Ping Cheng, Myung-Soo Kang, Shu-Jun Chiu, Elliott Kieff, Chih-Wen Peng   +8 more
doaj   +1 more source

Histone modification ChIP-seq on Arabidopsis thaliana Plantlets

Bio-Protocol, 2021
Characterizing the molecular mechanisms regulating gene expression is crucial for understanding the regulatory processes underlying physiological responses to environmental and developmental signals in eukaryotes.
Juan Ramirez-Prado, David Latrasse, Moussa Benhamed   +2 more
doaj   +1 more source

A ChIP on the shoulder? Chromatin immunoprecipitation and validation strategies for ChIP antibodies [PDF]

F1000Research, 2015
Chromatin immunoprecipitation (ChIP) is a technique widely used in the study of epigenetics and transcriptional regulation of gene expression. However, its antibody-centric nature exposes it to similar challenges faced by other antibody-based procedures, of which the most prominent are issues of specificity and affinity in antigen recognition.
Wardle, Fiona C., Tan, Haihan
openaire   +2 more sources