Results 61 to 70 of about 8,370,207 (250)
Prefix-Projection Global Constraint for Sequential Pattern Mining [PDF]
, 2015 Sequential pattern mining under constraints is a challenging data mining task. Many efficient ad hoc methods have been developed for mining sequential patterns, but they are all suffering from a lack of genericity.
B Negrevergne +7 more
core +2 more sources
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
BMC Bioinformatics, 2007 Background In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from low-throughput experimental biomedical research literature, extracted ...
Ma'ayan Avi +2 more
doaj +1 more source
SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements [PDF]
, 2007 Background: Transposed elements (TEs) are known to affect transcriptomes, because either new exons are generated from intronic transposed elements (this is called exonization), or the element inserts into the exon, leading to a new transcript.
Ast, Gil +4 more
core +3 more sources
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
Nucleic Acids Res., 2012 Complete knowledge of all direct and indirect interactions between proteins in a given cell would represent an important milestone towards a comprehensive description of cellular mechanisms and functions. Although this goal is still elusive, considerable
Andrea Franceschini +10 more
semanticscholar +1 more source
Computational and Structural Biotechnology Journal, 2012 The combination of computational and directed evolution methods has proven a winning strategy for protein engineering. We refer to this approach as computer-aided protein directed evolution (CAPDE) and the review summarizes the recent developments in ...
Rajni Verma +2 more
doaj +3 more sources
PrOnto Database : GO term functional dissimilarity inferred from biological data.
Frontiers in Genetics, 2015 Moonlighting proteins are defined by their involvement in multiple, unrelated functions. The computational prediction of such proteins requires a formal method of assessing the similarity of cellular processes, for example, by identifying dissimilar Gene
Charles E Chapple +6 more
doaj +1 more source
PINT: Protein-protein Interactions Thermodynamic Database
Nucleic Acids Research, 2006 The first release of Protein-protein Interactions Thermodynamic Database (PINT) contains >1500 data of several thermodynamic parameters along with sequence and structural information, experimental conditions and literature information. Each entry contains numerical data for the free energy change, dissociation constant, association constant, enthalpy ...
Kumar, M. D. Shaji, Gromiha, M. Michael
openaire +2 more sources
3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures
Molecules, 2017 Many studies have used position-specific scoring matrices (PSSM) profiles to characterize residues in protein structures and to predict a broad range of protein features.
Ruben Sanchez-Garcia +3 more
doaj +1 more source
Protein Sequence Analysis Using the MPI Bioinformatics Toolkit
Current Protocols in Bioinformatics, 2020 The MPI Bioinformatics Toolkit (https://toolkit.tuebingen.mpg.de) provides interactive access to a wide range of the best‐performing bioinformatics tools and databases, including the state‐of‐the‐art protein sequence comparison methods HHblits and HHpred.
Felix Gabler +7 more
semanticscholar +1 more source
Comparison of false-discovery rates of various decoy databases
Proteome Science, 2021 Background The target-decoy strategy effectively estimates the false-discovery rate (FDR) by creating a decoy database with a size identical to that of the target database.
Sangjeong Lee, Heejin Park, Hyunwoo Kim
doaj +1 more source